Genome annotation is the description of an individual gene and its product, RNA or protein. It includes the function assigned to the gene product and brief evidence for the assigned function. Since there are many genes and products to analyze, the best process typically involves both manual and automated annotation. Structural annotation involves examining genetic elements such as open reading frames, gene structure and regulatory motifs. Functional annotation consists of assigning biological function (regulation, interactions, expression) to these elements. Several of today’s ongoing genome annotation projects include:
Kovid BioAnalytics is an Informatics and Analytics company based in India. We specialize in building software, web-based or standalone applications for various bioinformatics projects, data curation and analysis services, etc. With a team of Bioinformatics experts and Software Developers we provide the following services: 1) Bioinformatics Software Development 2) Website Design and Maintenance for Bioinformatics Services 3) Curation of Genomics/Proteomics Data 4) Manual annotation of bioinformatics data and data mining 5) Technical writing services 6) Significance Analysis of micro-array data
Years in service: 12Other services offered by Kovid BioAnalytics Pvt. Ltd.:
Service | Description | Price |
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Differential Gene Expression Analysis | We have experience in performing Differential Gene Expression Analysis for various researchers from institutes like Washington University at St. Louis, West Mead Hospital (Australia), Spain Cancer Center and Bar Ilan University (Israel), etc. | $16.57 USD (per hour) |
Other Services | We have a team of 5 experienced Bioinformatics Experts and 2 web developers, that can built custom pipelines for NGS data analysis, web applications, data mining tools, websites, etc. | $16.57 USD (per hour) |
ChIP-Seq Analysis | $20.00 USD (per hour) | |
Metagenomic Analysis | We provide Metagenomic Analysis services including data curation as well as analysis. | $15.57 USD (per hour) |
Genome Annotation | $15.00 USD (per hour) | |
Variant Annotation | We provide variant annotation services that include manual annotation of variants using public databases as well as annotation through automated pipelines/tools like GEMINI. | $16.57 USD (per hour) |
Parseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment
We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis
Collaborations: genomic research labs, sequencing facilities, academic and research institutions.
Years in service: 13Other services offered by Parseq Lab:
Service | Description | Price |
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AC-Gen Reading Life is a Spanish pioneer company in the application of Next-Generation Sequencing technology (NGS) for clinical use. We have the NGS Ion Torrent™ platform available in our lab, and can carry out data analysis. Ion Torrent™ technology for NGS is the fastest and cost effective technology in the market for DNA analysis.
Mission: to improve the health and quality of life of people affected by genetic diseases.
Objectives: To provide high quality genetic analysis and cost-effective to help the implementation of personalized genomic medicine, as well as foster the development of partnerships in the field of research.
Years in service: 11Other services offered by AC-Gen Reading Life S.L.:
Service | Description | Price |
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Targeted Capture Analysis | Base calling, annottation | $300.00 USD (per sample) |
Genome Annotation | Bacteria genome | $400.00 USD (per sample) |
Base Calling | Torrent server and Ion reporter | $300.00 USD (per sample) |
Igenbio, Inc. develops genome analysis products and services for the life science industry. Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.
Our expertise includes, but is not limited to:
Igenbio has a large, secure cloud infrastructure that can expand to meet any project demands you may have - from large number of samples to quick turnaround times. Please inquire for more information.
At Igenbio, Inc. security of your data is a top priority. Your data is protected by best practices in physical and data security measures. This includes 24/7 physical security and monitoring, and the best available encryption for storage and transmission. Our employees are trained and knowledgeable in data security best practices.
Years in service: 11Other services offered by Igenbio, Inc.:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Comparative Genome Analysis | Inquire | |
Metagenomic Analysis | - Quality analytics of sequence reads - State of the art sample processing using academically-proven tools such as DADA2 and Kraken2 that work on all sequencing platforms such as Illumina & Pacific Biosciences. - Fast and accurate taxa identification using state-of-the-art machine learning algorithms that can identify taxa down to the species level. - Supports public databases (such as Silva,… | Inquire |
SNP / Indel Calling | Inquire | |
SNP/SV/CNV Discovery | Inquire | |
Genome Annotation | Gene Annotation and Functional Assignments placing genes into their functional or metabolic context utilizing KEGG Pathways, Gene Ontology, and the ERGO database. Optional - Identification of Antibiotic Resistance - including the genes, pathways, and specific drugs | Inquire |
Transcriptome de novo Assembly | Inquire | |
Transcriptome Annotation | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Whole Genome de novo Assembly | All current sequencing technologies support - Illumina, PacBio, Oxford Nanopore, 10x, Hi-C, Ion Torrent, and others. Igenbio scientists utilize a multitude of assembly strategies - denovo, reference based, hybrid, metagenomic, and others. | Inquire |
Base Calling | Inquire | |
Microbiome Analysis | - Quality analytics of sequence reads - State of the art sample processing using academically-proven tools such as DADA2 or Kraken2 that work on all sequencing platforms such as Illumina & Pacific Biosciences. - Fast and accurate taxa identification using state-of-the-art machine learning algorithms that can identify taxa down to the species level. - Supports public databases (such as Silva, Gree… | Inquire |
Diagnomics Inc. is a biotech company in the heart of the Biotech Beach, in San Diego California. The company focuses on products and services for personalized medicine based on personal genome and cutting edge bioinformatics analysis. Diagnomics provides complete personal genome sequencing and bioinformatics solutions to biomedical researchers, physicians and individuals seeking to understand the genetic influence of personal health and disease.
We aim to provide the highest possible quality genome sequencing service and annotation solutions from next generation sequencing (NGS) technology to guide personalized medicine based on an individuals' genetic information.
We are taking high-throughput computation and informatics seriously, and are constantly upgrading our server farm and softwares to enable cutting-edge bioinformatics for state-of-the-art genomic analysis. To that end, we house our infrastructure at a world class data center. Our server farm is located in San Diego, California at the ScaleMatrix facility.
Other services offered by Diagnomics:
Service | Description | Price |
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SNP / Indel Mapping | Inquire | |
SNP / Indel Calling | Inquire | |
Targeted Capture Analysis | Inquire | |
Genome Annotation | Inquire | |
Variant Annotation | Inquire | |
Base Calling | Inquire |
I approach analytic challenges creatively with the result being novel, statistically significant and reproducible. I have high expertise on differential expression using RNA-seq.
Expertise:
I've been working with whole genome experiments for the last 10 years. I analysed more than 1000 gene expression microarrays (Illumina and Affymetrix, Human, Mouse, Rat and Pig). I analysed RNA-seq samples (total RNA and polyA RNA) from SOLiD 5500xl and Ion Proton, ChIP-seq samples from Illumina HiSEQ and DNA-seq (Exome) samples from Illumina HiSEQ. I developed several tools for functional analysis (see cremag.org) of gene lists.
I have almost unlimited access to Amazon EC2 and large server on site (two 8x core Xeon with 216 GB RAM 64GB of SAS disks)
Other services offered by intelliseq:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Read Filtering and Cleaning | Inquire | |
ChIP-Seq Analysis | Inquire | |
Small RNA Mapping | Inquire | |
SNP / Indel Mapping | Inquire | |
Metagenomic Analysis | Inquire | |
SNP / Indel Calling | Inquire | |
Genome Annotation | Inquire | |
Methylation Analysis | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire |
Expertise in mainly with plant genomes (wheat, tomato, potato, tobacco, rice, maize, diatoms and arabidopsis).
Access to over 800 cores (2.3Ghz and faster) SMP compute cluster. Access to over 50TB of raw storage. Computing infrastructure includes all commonly used bioinformatics software and databases. All computing infrastructure is maintained by a 24/7 IT service.
Other services offered by Biosof LLC:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Comparative Genome Analysis | Inquire | |
Custom scripting and special projects | Inquire | |
Read Filtering and Cleaning | Inquire | |
SNP / Indel Mapping | Inquire | |
Genome Mapping | Inquire | |
SNP / Indel Calling | Inquire | |
SNP/SV/CNV Discovery | Inquire | |
Genome Annotation | Inquire | |
Transcriptome de novo Assembly | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Whole Genome de novo Assembly | Inquire |
NGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.
Our expertise is in the epigenetics field in mouse and human organisms.
we will provide FTP access to our storage server to upload raw data and download analyzed data.
Other services offered by Next Generation Intelligence:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Read Filtering and Cleaning | Inquire | |
Exome Analysis | Inquire | |
ChIP-Seq Analysis | Inquire | |
Small RNA Mapping | Inquire | |
SNP / Indel Mapping | Inquire | |
Genome Mapping | Inquire | |
SNP / Indel Calling | Inquire | |
SNP/SV/CNV Discovery | Inquire | |
Targeted Capture Analysis | Inquire | |
Genome Annotation | Inquire | |
Small RNA Annotation | Inquire | |
Methylation Analysis | Inquire | |
Transcriptome de novo Assembly | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Base Calling | Inquire |
Genome-scale interpretation and annotation of non-coding mutations in the human genome. Emphasis on mRNA splicing mutations affecting natural and regulatory sites. RNA binding protein (UTR) and transcription factor binding site mutation analyses are also available under special arrangement.
Expertise:
Expertise in non-coding mutation analysis. Homo sapiens, mus musculus.
Infrastructure:
We have a 128 node compute cluster, several I7-based Linux and PC workstations and an iMac. Our data and results are made available through a commercial website managed by our company.
Other services offered by Cytognomix Inc.:
Service | Description | Price |
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Genome Annotation | Inquire | |
Variant Annotation | Inquire |
ContigExpress is the leading integrated genomics data service provider. We offer genomic project management, data analysis, and bio-IT consulting services. Our unique value to our clients lies in our deep understanding of both biology and informatics. From project consultation, bio-IT infrastructure implementation, to data analysis, our experienced scientists deliver not only cost-effective customized informatic solutions but also their expert insights.
Our team consists of Ph.D.-level computational biologists with extensive training and professional practice in bioinformatics and genomic research. We understand both your cutting-edge research and your informatics challenges. We enable you and your team to extract actionable information from the vast amount of genomic data in a cost-effective and timely fashion.
We at ContigExpress strive to deliver affordable expert genomic data solutions to researchers and clinicians. We place the utmost emphasis on information confidentiality, data security, and data integrity. Please schedule a complimentary project discussion with one of our expert bioinformaticians to discover how we can help you move your genomics research forward!
Years in service: 15Other services offered by ContigExpress, LLC:
Service | Description | Price |
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Differential Gene Expression Analysis | Following is a list of common analysis items for RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Gene and transcript-based quantitation, RPKM/FPKM-based quantitation, Raw hit count-based … | Inquire |
Other Services | We are a professional bioinformatics service provider and we are happy to provide customized informatic solutions to your unique research and business needs. Please feel free to reach out to us to discuss how we can help you. | Inquire |
Exome Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
ChIP-Seq Analysis | Following is a list of common analysis items for ChIP-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Peaking calling with or without control samples 5) Gene assignment and peak annotation 6)… | Inquire |
Small RNA Mapping | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
Genome Mapping | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
Metagenomic Analysis | Following is a list of common analysis items for Metagenomics Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Sequence assembly 4) Biodiversity analysis and binning 5) Gene predication and functional annotation 6) Gene Ontology and path… | Inquire |
SNP/SV/CNV Discovery | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
Targeted Capture Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
Genome Annotation | Following is a list of common analysis items for Genome Annotation. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Gene prediction with or without RNASeq data 3) BLAST-based gene function annotation 4) Written project report with analysis methods, publication-ready graph… | Inquire |
Small RNA Annotation | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
Methylation Analysis | Following is a list of common analysis items for Methylation Sequencing, including MeDIP-Seq, hMeDIP-Seq, RRBS / Targeted Bisulfite-Seq, WGBS, and 5-mc RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Methylation state-sensitive mapping 4) … | Inquire |
Transcriptome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Transcriptome assembly, scaffolding and gap closure 4) Gene annotation (molecular function, Gene Ontology and pathways) 5) SNP disc… | Inquire |
Transcriptome Annotation | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Project consultation 2) Transcriptome annotation (molecular functions, Gene Ontology and pathway) 3) Written project report with analysis methods, publication-ready graphics, and references | Inquire |
Whole Genome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Contig assembly 4) Scaffolding and gap closure 5) Gene/ORF prediction 6) Gene annotation and classification via database search and… | Inquire |
Other services offered by Breakthrough Genomics:
Service | Description | Price |
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Genome Annotation | Genome data analysis and clinical reporting | $300.00 USD (per sample) |
Genome Annotation | If the client uses our software platform for annotation, it is free. | Inquire |
We offer a powerful genomics software platform that makes various bioinformatics tasks fairly straightforward to perform and deliver to customers. We also wrap this product with various service offerings for folks interested in one-off projects that deliver results rather than just subscribing to a software solution and then do the work themselves. We are comfortable with both scenarios. We are well versed in working with RNA-Seq, Genomes, Exomes, targeted panels, miRNA-Seq, Copy Number, Gene Expression, Protein Expression, and DNA Methylation from the level of raw sequencing reads or chip data all the way through to statistically-driven and knowledge-driven interpretations.
We are experienced in developing bioinformatics pipelines, providing data management solutions, analyzing the data using statistical methods and knowledge driven methods, and delivering professional-grade results. We are most familiar with human genomics projects, but have experience with other organisms as well. We are most focused on supporting sequencing projects, but are very capable of supporting array and PCR-based projects as well.
We leverage Amazon Web Services for most of our storage (EBS & S3) and computational resources (EC2). We are not frivolous about security, and we can provide you with security documentation to demonstrate how we leverage cloud resources while keeping best-in-class security. We also have powerful 16-core machines in our own private cloud that we leverage for service projects as well.
Years in service: 14Other services offered by Station X:
Service | Description | Price |
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Differential Gene Expression Analysis | $1655.00 USD (flat price) | |
Transcriptome Mapping | $100.00 USD (per sample) | |
Comparative Genome Analysis | $2500.00 USD (flat price) | |
Custom scripting and special projects | $275.00 USD (per hour) | |
Other Services | Visualizations, Report Generation, Customizations to our platform, Training, Scientific support, Presentation support, etc. | $300.00 USD (per hour) |
Read Filtering and Cleaning | $115.00 USD (per sample) | |
Exome Analysis | $2500.00 USD (flat price) | |
Small RNA Mapping | $100.00 USD (per sample) | |
SNP / Indel Mapping | $100.00 USD (per sample) | |
SNP / Indel Calling | $100.00 USD (per sample) | |
SNP/SV/CNV Discovery | $100.00 USD (per sample) | |
Genome Annotation | $85.00 USD (per sample) | |
Small RNA Annotation | $85.00 USD (per sample) | |
Transcriptome Annotation | $85.00 USD (per sample) | |
Variant Annotation | $85.00 USD (per sample) |
Bioinformatics Services for Plant Scientists and Breeders by Computomics
At Computomics.com, we deliver in-depth NGS analyses. We start by identifying your breeding or research goals, devise a sequencing strategy to achieve them and define the project deliverables and timeline through an initial consultation. Our methods include the latest algorithms from the bioinformatics community.
We protect the security of your data. We use high-performance servers in a high-security data center with two-factor access control mechanisms. During the analysis, we use transparent, reliable processes and quickly deliver highly reproducible results in constant feedback with you, via virtual or onsite meetings at your location.
Our NGS products are exclusively focusing on plant species and their interacting microbes, and include:
Computomics collaborates with world-leading scientists, opening up an unprecedented opportunity for breeders and plant scientists. We provide data of the highest possible quality that expedite your crop improvement programs.
Years in service: 12Other services offered by Computomics:
Service | Description | Price |
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Differential Gene Expression Analysis | Gene expression studies, or RNAseq allow you to sequence the entire transcriptome of a plant, and provide valuable applications in crop improvement programs We and our collaborators have published peer reviewed methods for accurate gene expression analysis. Our RNAseq analyses can determine exact gene expression levels including splice variants. Using machine learning techniques, we identify dif… | Inquire |
Comparative Genome Analysis | We excel at managing complex crop genomic variance studies. Our analysis can help you obtain a set of genomic markers to enhance rational and controlled breeding procedures. Markers may include single nucleotide polymorphisms (SNPs), insertions and deletions (InDels), copy number variations (CNVs) or structural variants (SVs). Taking into account the properties of your plant of interest and the … | Inquire |
Other Services | Bioinformatics Consulting In addition to our next-generation sequencing (NGS) products and services, We also offer individual consulting services. With a team of scientists and partners who are thought leaders in crop genomics, we give impartial advice, independent of any sequencing platform, technology or tool suite. Each consultation is unique, please contact us to receive a quote for your sp… | Inquire |
Other Services | Introgression and Insertion Delineation Next-generation sequencing is a great tool for molecular characterisation of seeds with genetic modifications or introgressions. We can provide answers to many regulatory and safety related questions, such as: At how many sites was the DNA integrated into the plant genome? What is the exact sequence of each insert? Is the sequence rearranged with respect t… | Inquire |
Other Services | Genomic Selection with Continuous Model Improvement Genomic Selection with Continuous Model Improvement Genomic selection is a highly successful strategy to predict breeding values in plants. Advances in sequencing and high-throughput variant discovery enable the collection of tens of thousands of markers for hundreds of plants, providing exciting opportunities for unleashing the full power of g… | Inquire |
Read Filtering and Cleaning | Inquire | |
Metagenomic Analysis | World’s Fastest, Most Accurate Metagenomics Plants interacts constantly with soil-borne microbes. These interactions vary from symbiotic to pathogenic. In a metagenomics study of the rhizosphere, DNA or RNA are sequenced using next generation sequencing instruments. Sequences that do not originate from the plant host are analysed to identify genes and species contained within the sample. A tax… | Inquire |
Genome Annotation | We perform de novo genome annotation using the latest in silico predictive approaches and RNAseq reads. We offer two machine learning-based gene prediction methods that can be trained to recognise biological features in your crop’s genome. The resources we use to build an annotation map include existing annotations for related organisms, RNAseq data, and PacBio complete isoforms. We use all avai… | Inquire |
Methylation Analysis | Statistically Sound Epigenetics Non-genetic factors affect crops traits and phenotypes. Identifying epigenetic patterns allow breeders and plant scientists to uncover expression correlations and non-genetically inherited gene regulation patterns. We specialize in crop epigenetics. Methylation of cytosine residues is a known mechanism for gene silencing and gene expression regulation. We use bi… | Inquire |
Whole Genome de novo Assembly | We have a deep understanding of both de novo and reference-based genome assembly of large crop genomes. It is crucial to first develop an effective strategy before selecting the appropriate sequencing technology and bioinformatics tools. A de novo genome assembly project must address sources of error up front, like sequence bias and read quality. A crucial point is quality control. We compare o… | Inquire |
We provide NGS data analysis services using public domain tools as well as CLC bio workbenches. Our services include primary, secondary and tertiary data analysis of NGs data from all platforms. Data analysis steps include read QC check, Assembly and metrics, Annotation, Variant detection, and annotation and biological interpretations. We also enter in to joint projects as industry partners.
Years in service: 14Other services offered by Labindia-GPOD:
Service | Description | Price |
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Exome Analysis | Exome analysis at our facility is performed using CLC bio Cancer workbench which helps in find and annotate variants more accurately. | $200.00 USD (per sample) |
Genome Mapping | We perform reference genome mapping using CLC bio Genomic recent version and also available public domain tools to benchmark the results. CLc bio has currently released faster genome mapper. We perform post assembly metrics to check correctness of reference assembly. | $150.00 USD (per sample) |
Genome Annotation | We perform Genome annotation using BLAST and BLAST2Go tools. We have FPGA based local facility which speeds up the BLAST process | $500.00 USD (per sample) |
Transcriptome de novo Assembly | Transcriptome de novo assembly and read map back is performed using CLC bio genomic workbench and other public domain tools. This analysis is followed by transcriptome annotation and tertiary analysis like pathaway findings. | $500.00 USD (per sample) |
Variant Annotation | Variant annotation is performed using CLC bio Cancer Research Workbench. | $600.00 USD (per sample) |
Whole Genome de novo Assembly | WGS de novo assembly is performed using latest version of the CLC bio Genomic Workbench and available public domain tools. End analysis helps to benchmark the results and robustness of the assembly. Post assembly metrics are performed to check the quality of the assembly | $500.00 USD (per sample) |
At NXT-Dx we can offer SE50, PE50 and PE100 sequencing on the Illumina HiSeq. On top of this we can also offer different sequencing settings on the Illumina MiSeq and shortly we will also be able to offer sequencing on the Illumina NextSeq.
We can offer sequencing of already prepared libraries but we can also offer full-scope projects whereby we receive cells, tissue, gDNA or RNA and take care of the sample preparation, library prep, sequencing and bio-informatics analysis.
We have worked with samples from all kind of species (mammalian, plant, bacterial) and all kind of cell types.
We pride ourselves in having close contact with our customers and only one single contact point. Also after the delivery of the data, we remain available to answer any questions customers might have on their data, their analysis, etc.
Years in service: 13Other services offered by NXT-Dx:
Service | Description | Price |
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Differential Gene Expression Analysis | $170.00 USD (per hour) | |
Transcriptome Mapping | $170.00 USD (per hour) | |
Comparative Genome Analysis | $170.00 USD (per hour) | |
Custom scripting and special projects | $170.00 USD (per hour) | |
Read Filtering and Cleaning | $170.00 USD (per hour) | |
Exome Analysis | $170.00 USD (per hour) | |
ChIP-Seq Analysis | $170.00 USD (per hour) | |
Small RNA Mapping | $170.00 USD (per hour) | |
Genome Mapping | $170.00 USD (per hour) | |
Targeted Capture Analysis | $170.00 USD (per hour) | |
Genome Annotation | $170.00 USD (per hour) | |
Small RNA Annotation | $170.00 USD (per hour) | |
Methylation Analysis | $170.00 USD (per hour) | |
Transcriptome Annotation | $170.00 USD (per hour) | |
Variant Annotation | $170.00 USD (per hour) | |
Base Calling | $170.00 USD (per hour) |
We offer computational analyses of Next-Generation Sequencing data (Illumina and Ion Torrent platforms), including RNA-seq, small RNA-seq, DNA-seq, Bisulfite-seq and ChIP-seq. Our bioinformatics support can be fully customized for your research needs, the scope and objectives of the study. We apply only up-to-data well-proven software and pipelines working under Unix/Linux environment. Optionally, our experts can help to interpret the obtained results from the scientific point of view, provided some of them are working in a close research field.
Other services offered by SciBerg:
Service | Description | Price |
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HybridStat is a company bringing together a team of highly qualified and motivated scientists and developers, whose expertise spans a variety of statistics and computer science domains. Main HybridStat’s services are centered on bioinformatics, biostatistics and analytics of high-throughput data derived from modern biological technologies such as Next Generation Sequencing (NGS), DNA microarrays and Mass Spectrometry. In addition, HybridStat offers customized software solutions regarding the above.
Regarding NGS, HybridStat offers a variety of one-stop shop data analysis and analytics services, spanning from genome alignments and preprocessing of raw short read fragments, up to analytical and specialized reports and figures describing the results of various NGS protocols including RNA-Seq (quality control, differential expression and splicing analysis, biochemical pathway enrichments etc.), ChIP-Seq (data normalization and peak calling, gene-binding site associations, methylation profiles, motif finding etc.), Whole Exome and Whole Genome Sequencing (data preprocessing, variant calling, filtering, annotation and interpretation, etc.) and Single Cell Sequencing data analysis, using both open source and optimized proprietary pipelines.
HybridStat, can also offer complete support to your organization through its advanced Whole Exome Sequencing analytics platform Clingon (www.clingon-mds.com). Clingon is a complete, integrated one-stop clinical genomics and medical decision support platform which performs data analysis from raw data up to the generation of clinical reports. It uniquely integrates and curates a handful of resources regarding gene-disease and gene product-drug associations as well as curated variant annotation data towards more timely and accurate results and the optimal design of personalized treatment plans.
Years in service: 10Other services offered by HybridStat Predictive Analytics:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | A fully descriptive and interactive report is provided. | $300.00 USD (flat price) |
Comparative Genome Analysis | $60.00 USD (per hour) | |
Custom scripting and special projects | $70.00 USD (per hour) | |
Other Services | $70.00 USD (per hour) | |
Read Filtering and Cleaning | $25.00 USD (per sample) | |
Read Filtering and Cleaning | $30.00 USD (per sample) | |
Read Filtering and Cleaning | $20.00 USD (per sample) | |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $150.00 USD (per sample) |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $170.00 USD (per sample) |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $200.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $70.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $85.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $100.00 USD (per sample) |
SNP / Indel Mapping | $30.00 USD (per sample) | |
SNP / Indel Mapping | $25.00 USD (per sample) | |
SNP / Indel Mapping | $40.00 USD (per sample) | |
Genome Mapping | $25.00 USD (per sample) | |
Genome Mapping | $20.00 USD (per sample) | |
Genome Mapping | $30.00 USD (per sample) | |
SNP / Indel Calling | $40.00 USD (per sample) | |
SNP / Indel Calling | $45.00 USD (per sample) | |
SNP / Indel Calling | $50.00 USD (per sample) | |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $40.00 USD (per sample) |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $50.00 USD (per sample) |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $60.00 USD (per sample) |
Whole Genome de novo Assembly | $1000.00 USD (flat price) |
iBinom is a cloud-based NGS data analysis service designed for clinical inherited disease diagnostics needs. We deliver ultrafast, accurate and easy-to-use genome analysis service for medical professionals around the world. Built-in raw data pre-processing ensures a high confidence output. Proprietary machine learning algorithms and sophisticated filtration system leads to ultimately precise interpretation results and reports a short-list of actionable variants. We support all popular data formats: fastq, fastq.gz, bam, vcf, vcf.gz We are platform-independent: Roche Junior, Roche 454, Illumina, Life Technologies
Years in service: 11Other services offered by iBinom :
Service | Description | Price |
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Exome Analysis | We offer exome analysis from raw data processing to variant reporting. Our pipeline implements thorough quality control and finely tuned algorithms tuned to achieve the highest precision, sensitivity and specificity of analysis. Our QC system forewarns of potentially missed reporting variants in uncovered regions. We guarantee reproducible and ultimately accurate results. | $400.00 USD (per sample) |
Genome Annotation | We provide an intuitive and flexible genome data filtration system that shortens the path to detecting the causative variants for inherited disease diagnostics. All relevant databases, scores and essential knowledge are plugged into the system. We automatically updates key data points on a regular basis. Free data re-analysis is available. We offer target panel, exome and whole genome variant a… | $50.00 USD (per sample) |
Our facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.
Years in service: 12Other services offered by Omega Bioservices:
Service | Description | Price |
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Differential Gene Expression Analysis | Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. | $56.00 USD (per sample) |
Differential Gene Expression Analysis | Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. | $110.00 USD (per sample) |
Transcriptome Mapping | Map mRNAs to either the reference or the assembled genome. | $332.00 USD (per sample) |
Custom scripting and special projects | We provide study specific bioinformatics analysis (known as tertiary analysis). such as (not limited to) 1) process secondary sequencing data analysis for a variety of platforms such as Nanostring, Nanopore, single cell expression. 2) integrative analysis across sequencing platforms (such as DNA-seq, RNA-seq, Chip-seq) 3) integrate meta/clinical information, perform association study and build p… | $60.00 USD (per hour) |
Read Filtering and Cleaning | Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. | $110.00 USD (per sample) |
Exome Analysis | Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. | $332.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. | $332.00 USD (per sample) |
Small RNA Mapping | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $221.00 USD (per sample) |
SNP / Indel Mapping | Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
Genome Mapping | Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. | $110.00 USD (per sample) |
Metagenomic Analysis | Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. | $551.00 USD (per sample) |
SNP / Indel Calling | Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
SNP/SV/CNV Discovery | Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
Targeted Capture Analysis | Variant call, gene annotation. Provided free of charge with sequencing service. | $332.00 USD (per sample) |
Genome Annotation | Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. | $221.00 USD (per sample) |
Small RNA Annotation | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $332.00 USD (per sample) |
Methylation Analysis | The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. | $553.00 USD (per sample) |
Transcriptome de novo Assembly | Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. | $553.00 USD (per sample) |
Transcriptome Annotation | Annotate or predict functions of transcribed genes using well know gene ontology tools. | $332.00 USD (per sample) |
Variant Annotation | Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. | $332.00 USD (per sample) |
Whole Genome de novo Assembly | Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. | $3315.00 USD (per sample) |
Base Calling | Demultiplex data and convert BCL files to FASTQ files | $110.00 USD (per sample) |
Committed to making newer technologies attainable to modern researchers, abm offers a wide range of sequencing services on the advanced Illumina® sequencing platforms at accessible prices and rapid turnaround times. abm's premium NGS services will not only save valuable time and money, but also provide the most reliable and comprehensive solution for the project's needs.
Advantages of using our NGS services: -dedicated NGS specialists to help with experimental design and data analysis -customizable bioinformatics analysis to suit your project needs -strict quality control at multiple steps in library preparation and sequencing -RNA-seq, miRNA-seq, WGS, metagenomics, Amplicon-Seq and more!
What types of bioinformatics analysis will be done? If the reference genome is available (i.e. human or mouse), read mapping and alignment to the reference genome is included in the service. -Data is available in industry standard formats: FASTQ (default), SFF or BAM. Other formats available upon request (additional fees may apply). -RNA-seq includes: Read mapping and gene expression level estimation
Our data report files are provided in formats that can be viewed with any standard text viewers.
Years in service: 11Other services offered by Applied Biological Materials Inc.:
Service | Description | Price |
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Zymo Research makes genome-wide epigenetic analyses available to every researcher with its comprehensive repertoire of services. All Next-Gen epigenetic sequencing services feature state-of-the-art sample prep technologies and workflows, cutting-edge bioinformatics, and are offered at competitive pricing. With our services, you don't have to be a bioinformatics guru; instead, our bioinformatics specialists will send you the data as a comprehensive report that is publication-ready and can be customized to fit your needs. Since we develop most of the technologies used for our services, our scientists and bioinformatics specialists are always available to answer your questions and assist you every step of the way.
Our Methyl-MiniSeq™ platform is based on an expanded reduced representation bisulfite sequencing (RRBS) protocol that allows genome-wide profiling of 5-methylcytosine (5-mC). Additionally, we can also work on a wide range of sample types including any species with a reference genome, low-input (>10 ng), and FFPE samples.
Our Reduced Representation Hydroxymethylation Profiling (RRHP) service is for genome-wide profiling of 5-hydroxymethylcytosine (5-hmC) in DNA at single-nucleotide resolution, and is the only such service available. RRHP also allows strand-specific determination of the location of the 5-hmC modification, as well as quantification of 5-hmC levels. Data from RRHP is easily integrated with DNA methylation data from Methyl-MiniSeq™, allowing for direct comparison of DNA methylation and hydroxymethylation in the same sample.
Years in service: 13Other services offered by Zymo Research:
Service | Description | Price |
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Other services offered by Bioinformatics Unit, Panacea Biosciences:
Service | Description | Price |
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Read Filtering and Cleaning | $40.00 USD (per sample) | |
Exome Analysis | End to End Exome-Seq Data Analysis | $75.00 USD (per sample) |
ChIP-Seq Analysis | we present step-by-step guidelines for the computational analysis of ChIP-seq data. We address all the major steps in the analysis of ChIP-seq data: sequencing depth selection, quality checking, mapping, data normalization, assessment of reproducibility, peak calling, differential binding analysis, controlling the false discovery rate, peak annotation, visualization, and motif analysis. | $80.00 USD (per sample) |
Genome Mapping | Available only for Human, Mouse and available sequenced geneomes | $75.00 USD (per sample) |
SNP/SV/CNV Discovery | End to End variant analysis | $70.00 USD (per sample) |
Small RNA Annotation | Available only for Human, Mouse and available sequenced geneomes | $60.00 USD (per sample) |
Base Calling | Base calling is the process of assigning bases (nucleobases) to chromatogram peaks. One computer program for accomplishing this job is Phred base-calling, which is a widely used basecalling software program by both academic and commercial DNA sequencing laboratories because of its high base calling accuracy. | $50.00 USD (per sample) |
We specialize in the services of DNA sequencing, genotyping, DNA library construction and aptamer development. Shotgun Library Sequencing, cDNA Library Sequencing, SAGE Library Sequencing, Whole Genome Sequencing and Primer Walking Sequencing. we offer high quality Re-sequencing & SNP Discovery Services. Quite a few of our staff scientists once participated in the International HapMap Project too.
extensive experience in whole genome shotgun sequencing services. Beginning from bacterial cells or genomic DNA, we provide you with accurate genome consensus sequences. We are also experienced in genome annotation and comparative genomics research. Notably our staff scientists have finished a number of whole microbial genome sequencing projects, such as the genomes of Pseudomonas bathycetes, Bacillus thuringiensis, Thermoanaerobacter tengcongensis, Streptococcus suis, and quite a few virus genomes. In addition, our in-house Laboratory Information Management System (LIMS) as well as manual basecalling ensures the highest service quality.
CD Genomics has been offering professional DNA library construction services for over 5 years. Hundreds of various cDNA libraries (such as standard cDNA library, large insert cDNA library, normalized cDNA library and subtracted cDNA library) and genomic DNA libraries (including short-insert plasmid shotgun library, large-insert plasmid shotgun library, whole genome shotgun library, Fosmid library, Cosmid library, MiniBAC and BAC library) have been constructed in our lab
CD Genomics has been dedicated to provide a full range of services to develop high quality customized aptamers for research, diagnostic and therapeutic applications. Services offered by CD Genomics include aptamer synthesis, aptamer generation, cell aptamer selection, aptamer design and modification, negative selection and so on.
Years in service: 19Other services offered by CD Genomics:
Service | Description | Price |
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Other Services | We provide statistical and bioinformatic data analysis services that help explain the large amounts of data commonly generated by next generation sequencing and genotyping experiments. Our bioinformatic staff consists of all PhD-level scientists trained in bioinformatics, biology and statistics. The software infrastructure for analysis is a combination of custom-built and open-source software. O… | Inquire |
SNP / Indel Mapping | CD genomics can help you analyze genetic variation efficiently to meet diverse research needs. By utilizing Affymetrix and Illumina array platforms, we support high-throughput and multiplex processing to meet diverse research needs, delivering high-quality data at a low per-sample cost. Advantages of SNP Microarray Custom, flexible, and scalable; High call rates (> 99%) and high accuracy; Cost-… | $80.00 USD (per sample) |
Metagenomic Analysis | Key Features and Advantages Longest average read lengths, with~50% of reads longer than 50kb, which exceeds the size of repetitive elements in the average bacterial genome. No DNA amplification. Highest consensus accuracy, low sequencing-context bias Novel bioinformatics analysis programs and pipelines Well-experienced personnel Sample Requirements: gDNA≥5 ug Sequencing Strategy: PacBio Platfo… | 120.00 |
Leveraging the expanding prospects of microbiome research, Leucine Rich Bion has integrated a robust computational pipeline "MetaRich" into a user-friendlyplatform for comprehensive analyses of any microbiome data.
After rigorous testing & validation of several leading microbiome analysis pipelines, tools & databases, we have compiled “MetaRich” to analyze both 16s rDNA & shotgun metagenomes, duly supplemented by our in-house computational tools. MetaRich will assist both researchers & industry personnel who are in pursuit of discovering biological insights within complex microbial systems & will ease the arduous task of large-scale microbiome data analysis.
Years in service: 10Other services offered by Leucine Rich Bio:
Service | Description | Price |
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Microbiome Analysis | For Individual Samples Abundance data - Raw & % Normalized Abundance Bar plots - Raw & % Normalized Pie charts - Kingdom through Phylum Alpha diversity Plots & index value table AMR Prediction Comparative Analyses Differential abundance data (across groups) Abundance Bar plots Raw & % Normalized Alpha diversity Plots & index value table Beta diversity Plots & index value table PCoA analysis & pl… | $9.00 USD (per sample) |
Dreamgenics is a biotech company that offers bioinformatics analysis services for genomic, transcriptomic and metagenomic NGS data using our Genome One software. Genome One (CE-IVD certified) is an advanced tool that allows the integration of all the bioinformatics solutions required for the study, including read alignment, variant calling and annotation. Our analyses identify high-quality genomic variants through high sensitivity and specificity standards, extracting important biological information and reducing validation costs. The services that we offer are the following: WGS, WES, Gene panels, Transcriptomics (RNA-Seq) and Metagenomics. Additionally, we hand in the results using our web viewer Genome One Reports (https://www.dreamgenics.com/en/genome-one/).
The use of our bioinformatics tools allows us to offer you high-quality results in a fast and simple way. By using our analysis services, you considerably reduce costs and the investment in technological devices, informatics and qualified professionals.
Lastly, we are an ISO 9001:2015, UNE-EN ISO 13485:2018 and UNE-ISO/IEC 27001:2017 certified company which represents our commitment to provide our customers with products and services that meet the most demanding quality standards.
Years in service: 13Other services offered by Dreamgenics:
Service | Description | Price |
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Single Cell RNA-Seq Analysis | We offer Single cell RNA-Seq bioinformatic analysis from FASTQ files including: - Sequencing and mapping quality control. - Alignment of reads against reference genome. - Quantification of gene expression at the single cell level. - Reduction of data dimensionality. - Clustering or division of cells into different groups and subgroups. - Differential gene expression analysis. - Study of the evol… | $200.00 USD (per sample) |
Differential Gene Expression Analysis | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
Exome Analysis | Our bioinformatics analysis includes: Quality control, Alignment, Detection of high quality variants (SNVs, translocations and CNVs), Filtering of common variants, Annotation of variants obtained with multiple databases and prediction algorithms and Comparison between samples and extraction of recurrent variants. We will deliver the results to the Genohub data bucket as well as through our platf… | $80.00 USD (per sample) |
Transcriptome Annotation | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
genexa is a genomic data analysis provider located in Switzerland. Our bioinformatics services are centered around de novo assembly of genomes and metagenomes. We focus on processing, analysis, and interpretation of your genomics data. For all our fields of expertise, we offer to perform the entire analysis workflow from raw data to documentation, but also consulting and troubleshooting if required. genexa also provides resources to run computationally demanding tasks for specific jobs if you have an existing analysis workflow, but lack the computational resources to run it on large amounts of data. For further information check: genexa.ch
Years in service: 10Other services offered by genexa Ltd:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Comparative Genome Analysis | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | We offer bioinformatics services using long-read sequencing (PacBio & Oxford Nanopore Technologies). We have several years of experience using third-gen. technologies, mainly applying these technologies for de novo assembly of individual genomes and metagenomes. We also offer transcriptomic analyses using long-read technologies. If you want to start using PacBio or Oxford Nanopore Technologies,… | Inquire |
Read Filtering and Cleaning | Inquire | |
Metagenomic Analysis | Inquire | |
SNP / Indel Calling | Inquire | |
Genome Annotation | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Whole Genome de novo Assembly | Inquire | |
Base Calling | Inquire | |
Microbiome Analysis | Inquire |
World Fusion is a well-established bioinformatics and cheminformatics software developer and services supplier with offices in Japan and the US. We have been at the forefront of developing genomic and drug discovery research tools since our early work on the Human Genome Project, and offer unparalleled reliability and expertise in our services.
Our customizable services include NGS data analysis, in-silico research services, and we are annotation specialists offering the most comprehensive correlations between genes, proteins, diseases, and chemicals.
The majority of the information is generated from our proprietary genomic and drug discovery research platform and knowledge base that we have been upgrading and building upon for over 10 years. It is comprised of original in-house data, curated information from over 60 top public data sets, and a chemical dictionary containing over 75 million non-redundant chemical compounds.
Our more recently added metagenomic and metaranscriptomic analysis services are carried out using state-of-the-art, original in-house software applications.
We offer MANY additional services, please contact us about your specific needs.
Years in service: 19Other services offered by World Fusion US:
Service | Description | Price |
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Other Services | In-silico target exploration from disease - therapeutic targets, related drugs, gene and protein targets, etc. Includes an extensive annotation table with information about the disease and related diseases, SNPs, compounds, drugs, genes, proteins, and tissues. | Inquire |
Other Services | Target Prioritization helps with the selection of gene/proteins for your research, from gene expression/SNV data - the analysis provides information about compounds and the activities, assays, SNPs, diseases, domains, pathways, and references. | Inquire |
Other Services | Target prediction from chemical structure - prediction of target proteins which is based on: 1.5M compounds, 5500 protein, and 5M interactions. | Inquire |
Metagenomic Analysis | Analysis of the transcripts present in the RNA-seq data through frequency analysis of functional categories from the selected protein DB (such as COG). Result files include annotations from ligand information with related chemical compounds, pathways, and iPath. •Biological function information •Metabolic compound info from proteins •Multiple sample analysis •Bar charts, pie charts, and fr… | Inquire |
Metagenomic Analysis | 16S/28S/ITS rRNA metagenomic data analysis of the composition and diversity of microbial or fungal species from natural environments. Interactive HTML report with taxonomically classified charts & graphs, read counts, 2D, 3D, and interactive PCA plots, heat clustering maps, and self-organizing maps. •Metagenomic analysis of bacteria from species classification of taxonomic rank •Fungal metag… | Inquire |
Genome Annotation | Gene/Protein Annotation Services: • Identify relationships beween genes and proteins or diseases • Cite connections between genes or proteins and chemicals • Extract bind/inhibit chemicals from proteins or genes • Examine SNP information and association with disease • Find bind/inhibit compounds and therapeutic targets from associated disease • Gene expression prioritization from RNAseq dat… | Inquire |
Transcriptome Annotation | Expression data analysis includes over 20 kinds of annotation such as: genes (ontology, pathways), proteins, diseases, domains, ligands, and compounds. Prioritization of genes and proteins can be executed from a variety of directions. •Statistical processing from expression values •Conversion and active compound information from proteins •Inhibitor compounds and inhibitory active compounds … | Inquire |
Variant Annotation | Analysis focuses on the SNP variant amino acid change and includes annotations of related diseases, genes, proteins, assays, ligands, SNPs, domains, and chemical compounds (active compound information, crystal structure, chemical formula, activities, etc.). •Non-synonomous SNPs and chemicals influenced by mutation location •Information about the compounds and proteins affected by the amino a… | Inquire |
Cofactor is focused on 3 main applications: RNA-sequencing, de novo assembly, and SNP/INDEL detection via resequencing. Over the last year, we have put significant R&D into our RNA-seq pipeline, and are now pleased to offer industry-leading protocols such as molecular spike-in controls, unprecedented QA/QC checks, ribosomal content screening, saturation analysis, and our ActiveSite Expression Viewer. These same protocols are also applied to our miRNA sequencing pipeline.
Other applications that fit well within our pipeline are: amplicon sequencing, custom capture and sequencing, 16S sequencing/microbiome sequencing, and highly custom projects.
Our scientists are happy to work with traditional model organisms, but we are experts in the more obscure. We've worked with nucleic acids from the complex field isolates, many plants including grapes, a variety of obscure animals including the Tardigrade (Water bear), and bacteria from multiple sources (micro biome, marine, biofuels, etc) to name a few.
While we are set-up to act as consultants, and support researchers throughout a full-service sequencing project, we are also happy to address the needs of more experienced researchers. Our expertise in library preparation or analysis may also be procured separate from the full-service offerings. And, those researchers who work with us in any capacity will have access to our team of scientists for support.
We have worked on small scale (1 sample) projects, all the way up through the larger, high throughput projects developed by big pharma. Every customer receives the same level of attentive, knowledgable customer service.
Years in service: 16Other services offered by Cofactor Genomics:
Service | Description | Price |
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The Arizona Genomics Institute (AGI) offers DNA extraction, sequencing, and bioinformatic analyses. AGI has a two-decade long experience with isolation and purification of high-molecular weight DNA from plants and many other organisms. Since 2015, AGI is a PacBio Certified Service Provider, and currently operates the Sequel IIe instrument. Since the beginning of the genomics era, AGI has been a leader in genome analyses (BAC libraries, WGS sequencing, physical mapping) to the plant research realm, being the major lead in the rice and maize genome sequencing projects. So far, AGI's Service Center has developed more than 800 projects. Most of them are whole-genome shotgun sequencing projects, but a relevant part consists in Iso-Seq and amplicon sequencing projects. AGI has extensive experience in extracting high-molecular weight, highly-pure DNA for any sequencing application, from difficult plant, fungal, and metagenomic samples.
Years in service: 20Other services offered by Arizona Genomics Institute:
Service | Description | Price |
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Genome Annotation | inquire for details | Inquire |
Whole Genome de novo Assembly | inquire for details | Inquire |
ChunLab specializes in NGS and bioinformatics for the fields of bacterial genomics, metagenomics, transcriptomics and bacterial identifications.
ChunLab maintains a portfolio of leading NGS technology to provide you a one-stop fully integrated NGS sequencing to bioinformatics solution.
While other companies deliver massive amounts of NGS data in Excel or text file formats, we go a step further to provide in-depth bioinformatics aligned with client's goal of discovery. Moreover, we provide sophisticated yet easy to use cloud-based tools, with our full-service solution, enabling quick visualizations, secondary analysis and comparative analysis.
Our user-friendly bioinformatics web tools are each tailored for a specific research need giving you true insight into your data without the aid of a bioinformatics specialist. Furthermore, by managing the entire pipeline, we ensure quality control at every step of the process meaning you have more meaningful downstream analysis.
Years in service: 15Other services offered by ChunLab:
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