Involves the analysis of microbial communities using bioinformatics tools. These include analyzing amplicon sequences, metagenome shotgun sequences and metatranscriptome sequences.
Committed to making newer technologies attainable to modern researchers, abm offers a wide range of sequencing services on the advanced Illumina® sequencing platforms at accessible prices and rapid turnaround times. abm's premium NGS services will not only save valuable time and money, but also provide the most reliable and comprehensive solution for the project's needs.
Advantages of using our NGS services: -dedicated NGS specialists to help with experimental design and data analysis -customizable bioinformatics analysis to suit your project needs -strict quality control at multiple steps in library preparation and sequencing -RNA-seq, miRNA-seq, WGS, metagenomics, epigenetics, Amplicon-Seq and more!
What types of bioinformatics analysis will be done? If the reference genome is available (i.e. human or mouse), read mapping and alignment to the reference genome is included in the service. -Data is available in industry standard formats: FASTQ (default), SFF or BAM. Other formats available upon request (additional fees may apply). -RNA-seq includes: Read mapping and gene expression level estimation
Our data report files are provided in formats that can be viewed with any standard text viewers.Years in service: 6
Other services offered by Applied Biological Materials Inc.:
|Differential Gene Expression Analysis||Service includes: 1) Principal component analysis; 2) Differential gene expression analysis; 3) Gene expression clustering; 4) Full analysis report||$222.00 USD (per sample)|
|Exome Analysis||Service includes: 1) Read mapping; 2) deduplication, local realignment and base recalibration; 3) Variation calling; 4) Variation annotation (dbSNP, COSMIC, ClinVar, 1000 Genome); 5) Full analysis report||$95.00 USD (per sample)|
|Metagenomic Analysis||Service includes: 1) Contig assembly; 2) OTU clustering and classification; 3) Alpha/beta diversity analysis; 4) Full analysis report;||$35.00 USD (per sample)|
|SNP / Indel Calling||Service available for WGS and WES to include: 1) Read mapping; 2) De-duplication, base quality recalibration, and local realignment; 3) SNP and Indel calling||$225.00 USD (per sample)|
|Genome Annotation||Service includes: 1) Gene prediction; 2) Functional annotation from KEGG, GO, NCBI||$333.00 USD (per sample)|
|Whole Genome de novo Assembly||Service for De novo assembly of genome size < 10Mb.||$350.00 USD (per sample)|
|Microbiome Analysis||Service includes: 1) Contig assembly; 2) OTU clustering and classification; 3) Alpha/beta diversity analysis; 4) Full analysis report;||$35.00 USD (per sample)|
Parseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment
We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis
Collaborations: genomic research labs, sequencing facilities, academic and research institutions.Years in service: 8
Other services offered by Parseq Lab:
One Codex provides a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access.
One Codex empowers microbiologists, epidemiologists, and clinical researchers to access the wealth of data provided by modern genome sequencing technology.
Other services offered by One Codex:
|Microbiome Analysis||One Codex provides a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access.||Inquire|
|Metagenomic Analysis||One Codex provides a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access.||Inquire|
All Genomics is the first Chilean company dedicated to developing genetic tests using the latest technologies for DNA analysis (Next-Generation Sequencing). Our main goal is to develop clinical diagnostic kits validated for Chile and Latin America, with a focus on metabolic diseases. Available kits: - Human microbiome and interpretation - Mitochindrial DNA sequencing and SNP analysis - Pharmacogenomics and SNP analysis - SNP genotyping - Rare diseases investigation - Exome sequencing - Whole genome sequencing
Animal metagenome and analysis
Other services offered by All Genomics:
|Microbiome Analysis||The report will include main results, bacterial composition from phylum to genus (specie when posible), alpha diversity (family, genus, species and rarefaction curves), beta diversity (family, genus, species and rarefaction curves), Krona visualization template, OTU (family, genus, species).||$100.00 USD (per sample)|
Shotgun Metagenomics Analysis: strain level resolution for bacteria, virus, fungi, protists Gene characterization: antibiotic resistance, virulence factors and function SNP analysis 16S / 18S / 23S / ITS amplicon analysis Whole Genome Sequencing Targeted SequencingYears in service: 10
Other services offered by CosmosID:
|Metagenomic Analysis||Metagenomic analysis of whole genome shotgun datasets using GENIUS® bioinformatics software and curated GenBook databases of bacteria, viruses, fungi, parasites and antibiotic resistance and virulence genes.||Inquire|
|Microbiome Analysis||CosmosID is a genomic big data company focused on rapid identification of microorganisms for infectious disease diagnostics, public health surveillance, food safety inspections, pharmaceutical discovery, and microbiome analysis for health and wellness. Prices decrease as sample volume increases.||Inquire|
MeghaGen, is a life sciences company providing end-to-end services for NGS sequencing and data analysis.
*We have established and implementing highly scalable pipelines to help researchers with their NGS-related data analysis.
*We help in processing, analyzing and interpreting all application areas spawned by NGS technologies. For example, --Detection of variants in the genomes of all organisms with reference genomes including human, plants, animals and microbes. --RNA-sequencing to detect expression levels of gene, splice variants, lincRNA and miRNA that correlate with a given biological context --Exome and targeted sequencing to discover actionable genetic variants for medical applications. --Microbiome profiling using 16s rRNA or whole-genome metagenome. --Epigenetic changes in biological contexts using ChIP-seq, Methyl-seq, BS-seq. --De novo sequencing and assembly of genomes or organism without a reference.
*We can work together to develop the analysis pipelines for any customized applications that you might conceive using cutting edge cloud computing.
*Analysis comes with publication-ready plots and tables.
*MeghaGen uses AWS cloud based platform that is super-optimized for data analysis and data archival.
*We strive to ensure that our clients enjoy the highest quality and most cost-effective bioinformatics solutions.Years in service: 4
Other services offered by Meghagen Biosciences Private Limited:
|Differential Gene Expression Analysis||$150.00 USD (per sample)|
|Transcriptome Mapping||$135.00 USD (per sample)|
|Comparative Genome Analysis||$300.00 USD (per sample)|
|Custom scripting and special projects||Inquire|
|Read Filtering and Cleaning||$30.00 USD (per sample)|
|ChIP-Seq Analysis||$150.00 USD (per sample)|
|Small RNA Mapping||$120.00 USD (per sample)|
|SNP / Indel Mapping||$150.00 USD (per sample)|
|Genome Mapping||$120.00 USD (per sample)|
|SNP / Indel Calling||$120.00 USD (per sample)|
|SNP/SV/CNV Discovery||$300.00 USD (per sample)|
|Targeted Capture Analysis||$125.00 USD (per sample)|
|Genome Annotation||$1250.00 USD (per sample)|
|Small RNA Annotation||$300.00 USD (per sample)|
|Transcriptome de novo Assembly||$2000.00 USD (per sample)|
|Transcriptome Annotation||$1000.00 USD (per sample)|
|Variant Annotation||$100.00 USD (per sample)|
|Whole Genome de novo Assembly||$3500.00 USD (per sample)|
We are a microbiome, amplicon, and genome sequencing facility. We offer services from DNA extraction to library prep (including custom library design) and sequencing.Years in service: 5
Other services offered by UConn CORE MARS:
|Microbiome Analysis||OTU clustering using mothur. Data input fastq, data products: OTU tables for each level, alpha and beta diversity calculations for each level.||$150.00 USD (flat price)|
|Microbiome Analysis||Custom statistical analysis of microbiome data. Data input: OTU table, spreadsheets linking sequences with experimental conditions/results. Data output: custom analysis, publication quality figures, etc. Please contact firstname.lastname@example.org to discuss your needs and to request a quote.||$115.00 USD (per hour)|
Leucine Rich Bio has been selected as the award recipient for the"2016 Frost & Sullivan India Award for Enabling Technology in the Cloud-enabled Genomics Industry, APAC"
Leucine Rich Bio Private Limited is a Bioinformatics driven company based in the Silicon Valley of India, Bangalore, specializing in Next Generation Sequencing (NGS) Data Analysis & Interpretation. Our area of focus is in Human Genome Interpretation, especially for clinical and research use. We use advances in the area of Computer Science, Information Science, Data Management, Statistics and Systems Biology to solve complex problems in Genomics. We envision using cutting edge big data approaches along with machine learning algorithms to delve deeper into the understanding of the human genome and develop novel solutions to drug discovery.
At Leucine Rich Bio we have in-depth knowledge on Cancer Genomics, Genetic Conditions caused by Rare Variants and Drug Response. We have collated information on Genetic Variants, Mendelian Inheritance, Genome Wide Association Studies and Pharmacogenomics data. Our in-house curated database (LRB – Human Genome Variation Database) is developed that cross-checks all information with the original scientific literature to ensure data is accurate, clinically relevant and up to date. The database provides functional information, mutation impact on disease, drug response and variant impact on protein structure and functions, with its relevant references.
Our pipelines are tailored to accurately generate a report in a clinically relevant time frame. Our proprietary platform AGIS based customized report translates complex genomic data into clinically relevant and actionable biological information. At Leucine Rich Bio we help clinicians appreciate the value of Personalized Medicine. Our in house curated database LRB-HGVD is tailored to provide variant functional information to AGIS
Our dynamic genome interpretation service provides researchers in pharmaceutical industry and top research labs worldwide with choice of bioinformatics suite to interpret, analyse and act on relevant information derived from ever evolving NGS data.
Other services offered by Leucine Rich Bio:
|Read Filtering and Cleaning||Leucine Rich Bio offers Read filtering, cleaning and quality control analysis. We also offer statistical and heuristic analysis. Literature mining services are also provided. As we are Bangalore (India) based company, we offer very competitive pricing.||$75.00 USD (per sample)|
|Small RNA Annotation||Inquire|
|Comparative Genome Analysis||Inquire|
|Differential Gene Expression Analysis||Inquire|
|Targeted Capture Analysis||Inquire|
|SNP / Indel Calling||Inquire|
|SNP / Indel Mapping||Inquire|
|Transcriptome de novo Assembly||Inquire|
|Whole Genome de novo Assembly||Inquire|
|Custom scripting and special projects||Inquire|
We offer bioinformatics analysis services for human and other organisms genomic and transcriptomic NGS data.
Our team of experts offers a completely personalized consulting service, including scientific and technical solutions to your needs. We help you to obtain the best results from your analysis.
Our collaboration with the most reliable sequencing providers allow us to select the most suitable platform for your project. We also can assist you in all steps prior to sequencing, such us sample and library preparation and quality controls.
DREAMgenics bioinformatics framework has been designed to readily adapt to your needs. Capable of integrating your own algorithms, pipelines and databases to complement the data analysis and interpretation.
Our analyses identify high quality genomic variants through excellent sensitivity and specificity standards, extracting meaningful biological information and reducing validation process costs. The results will be delivered through a detailed report.
We offer the possibility of advanced visualization and interactive review of results through our exclusive DG Reports web application. (Filtering and priorization of variants, Pre-classification of variants, Graphic interface (genomic browser), Statistics and quality controls, Exportable information, Automated generation of reports).
All our procedures meet with the requirements set by the new General Data Protection Regulation.Years in service: 7
Other services offered by DREAMgenics:
|Comparative Genome Analysis||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Custom scripting and special projects||https://www.dreamgenics.com/en/bioinformatics-services/ https://www.dreamgenics.com/en/research-projects/||Inquire|
|Other Services||- Research projects https://www.dreamgenics.com/en/research-projects/ - Bioinformatics software design and developments https://www.dreamgenics.com/en/hd-genome-one-en/ - Gene and/or regions of interest panels, ATAC Seq, Family studies, trio analysis.. https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Differential Gene Expression Analysis||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Read Filtering and Cleaning||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Small RNA Annotation||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Small RNA Mapping||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|SNP / Indel Calling||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|SNP / Indel Mapping||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Targeted Capture Analysis||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Transcriptome de novo Assembly||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
|Whole Genome de novo Assembly||https://www.dreamgenics.com/en/bioinformatics-services/||Inquire|
Microbiome Insights provides pre- and post- consultations (end-to-end services) which include study design and sample guidance on the front end, and bioinformatics consultation on the back end. We offer iTag amplicon sequencing (16S V4, 16S V1-V3 and 16S V4_skin as well as ITS2,18S V4 and Archaeal 16S V4) using the Illumina Miseq, shotgun metagenomics using the Illumina Nextseq or HiSeq, custom qPCR development, SCFA analysis and Calprotectin analysis. We provide our customers with a highly comprehensive, publication quality bioinformatics report. Our depth of expertise allows us to work with various sample types from human, animal, plant, soil and environmental ecosystems.
Other services offered by Microbiome Insights Inc:
|Microbiome Analysis||HIghly comprehensive bioinformatics reporting - basic bioinformatics included in price. Additional advanced analytics charges separately. Reporting on amplicon sequencing includes relative abundance and alpha/beta diversity scores. Reporting for shotgun is on a per study basis.||Inquire|
genexa is a genomic data analysis provider located in Switzerland. Our bioinformatics services are centered around de novo assembly of genomes and metagenomes. We focus on processing, analysis, and interpretation of your genomics data. For all our fields of expertise, we offer to perform the entire analysis workflow from raw data to documentation, but also consulting and troubleshooting if required. genexa also provides resources to run computationally demanding tasks for specific jobs if you have an existing analysis workflow, but lack the computational resources to run it on large amounts of data. For further information check: genexa.chYears in service: 4
Other services offered by genexa Ltd:
|Comparative Genome Analysis||Inquire|
|SNP / Indel Calling||Inquire|
|Read Filtering and Cleaning||Inquire|
|Custom scripting and special projects||Inquire|
|Whole Genome de novo Assembly||Inquire|
|Other Services||We offer bioinformatics services using long-read sequencing (PacBio & Oxford Nanopore Technologies). We have several years of experience using third-gen. technologies, mainly applying these technologies for de novo assembly of individual genomes and metagenomes. We also offer transcriptomic analyses using long-read technologies. If you want to start using PacBio or Oxford Nanopore Technologie...||Inquire|
|Differential Gene Expression Analysis||Inquire|
TACGenomics has a team composed of bioinformatician, molecular biologist and computer scientist who are all at Ph.D. level. Our team has the experience of hundreds of NGS data analysis projects from all over the world. The mission of TACGenomics is to help our customer to solve the biological questions. After computation analysis completed by the bioinformatician, our molecular biologist will interpret the analyzed data carefully, provide more insight into your project and help the publication of the project in the high impact journal.Years in service: 4
Other services offered by TACGenomics:
|Differential Gene Expression Analysis||Differentially expressed genes were identified using the edgeR program. Genes showing altered expression with p < 0.05 and more than 1.5 fold changes were considered differentially expressed. Goseq was used to perform the GO enrichment analysis and Kobas was used to performed the pathway analysis.||$50.00 USD (per sample)|
|Transcriptome Mapping||The reads were first mapped to the latest UCSC transcript set using Bowtie2 version 2.1.0 and the gene expression level was estimated using RSEM v1.2.15. TMM (trimmed mean of M-values) was used to normalize the gene expression.||$50.00 USD (per sample)|
|Custom scripting and special projects||$50.00 USD (per hour)|
|Exome Analysis||Our team has successfully discovered a causal variant which lead to a mendelian disorder through analyzing 20 samples in three-generation family. The error rate of genotype we called in this family is only 0.2% which indicate that our pipeline detect all the SNV very accurately.||$80.00 USD (per sample)|
|ChIP-Seq Analysis||$80.00 USD (per sample)|
|Genome Mapping||$50.00 USD (per sample)|
|Metagenomic Analysis||$100.00 USD (per sample)|
|Methylation Analysis||$100.00 USD (per sample)|
|Transcriptome de novo Assembly||$100.00 USD (per sample)|
|Whole Genome de novo Assembly||$1000.00 USD (per sample)|
|Microbiome Analysis||$50.00 USD (per sample)|
Bio Knowledge Lab, S.L. is a young biotech & bioinformatics startup from Cordoba, Spain. We work giving support to public and private research groups and other type of R&D Company. We provide solutions in many areas; basically, we manage any request from the costumer: from molecular biology kits & reagents, laboratory services, image analysis to bioinformatics services.
We are specialist in bioinformatics and data analysis, providing a long list of services. We also elaborate costumed services, because we now the wide range of bioinformatics services and data analysis that can be offered.
In the past we have provided services as:
· Referenced-guided genome assembly · Whole genome de novo assembly · Exome analysis · Sequences annotation · SNPs/Indels analysis · Transcriptome de novo assembly · Transcriptome mapping · RNA-Seq: Quantification and differential expression analysis · sRNA analysis · lncRNA analysis · Basic amplicon 16S/18S/ITS analysis · Extended amplicon 16S/18S/ITS analysis · Whole metagenome analysis · Metatranscriptome analysis · Methylation analysis · Personalized Customer ServicesYears in service: 1
Other services offered by Bio Knowledge Lab, S.L.:
|Exome Analysis||Whole Exome Sequencing presents a powerful too to study relevant genetic variants if protein-coding sequences of a genome, due to their relations with heritable phenotypes, including genetic disorders.||$250.00 USD (per sample)|
|Genome Annotation||Genome annotation is the process of indentying regins of interest in a DNA sequence in order to assign specific with descriptive information about structure or function. Through this service it is provide an integrated analysis, generating an exhaustive sequences annotation.||$350.00 USD (per sample)|
|SNP / Indel Calling||SNP/Indel calling is a procedure for identifying genomic variations given a High Throughput Sequencing datase. These variations, without being mutations, can be related to diverse phenotypes.||$350.00 USD (per sample)|
|SNP / Indel Mapping||SNPs and Indels are genomic variations that, without being mutations, can be related to diverse phenotypes. The detection of these of these variations could provide information about diseases with a genetic component, recombination, etc.||$250.00 USD (per sample)|
|Transcriptome de novo Assembly||De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without a reference genome. This process is helpful for RNA-Seq data treatment as the full transcriptome is built for Forthcoming Research (Functional Annotation, Mapping, etc).||$500.00 USD (per sample)|
|Transcriptome Mapping||One of the most popular and useful procedures in Bioinformatics, Mapping, is used as basic step in larger analysis. It consists in the positioning of sequences over a larger sequence, typically a Genome. Its applications are mainly quantification, assembly, variant analysis, alternative splicing study or localization of sequences among other.||$150.00 USD (per sample)|
|Differential Gene Expression Analysis||RNA-Seq is a technique that has gained popularity among Life Scientists in recent years. Usually, these studies are designed to compare samples under different experimental conditions. RNA-Seq provides information about what is happening inside a cell, tissue or any other biological sample, but this raw information is massive and complex.||$200.00 USD (per sample)|
|Methylation Analysis||The study of Methylation requires a Bisulfite Pyrosenquencing Procedure because is the only technique that can detect Cytosine Methylation at this level nowadays. A knowledge of the different Methylation Patterns under different conditions can clarify how the ambient can influence the cell functionality.||$300.00 USD (per sample)|
|Metagenomic Analysis||Basic Amplicon 16S/18S/ITS Analysis supplies taxonomic characterization of the microbial community and relative quantification of the classified microorganisms.||$65.00 USD (per sample)|
|Microbiome Analysis||Whole Genome Sequencing (WGS) of a Microbial Sample will generate read sequences from the Genome of all the organisms included in the Analyzed Sample. Whole Metagenome Analysis provides classification of species level taxonomy and even it allows to analyze the metabolic pathway activities from the Microbial samples.||$1500.00 USD (per sample)|
|Microbiome Analysis||Metatranscriptomics allows to quantify Gene Expression from all the Microbial sample providing a large amount of information about functions or activated pathways, showing a complete and general view of the microbial community dynamics.||$1500.00 USD (per sample)|
|Small RNA Mapping||small RNA libraries are mapped to a reference genome. *From our company, Bio Knowledge Lab, S.L. can provide a complete small RNA Analysis that includes mapping, annotation and also discovering of small RNA. Contact us for more information and for a quote.||$250.00 USD (per sample)|
|Small RNA Annotation||small RNA libraries are mapped to a reference genome and annotated using several databases . *From our company, Bio Knowledge Lab, S.L. can provide a complete small RNA Analysis that includes mapping and annotation and also discovering of small RNA. Contact us for more information and for a quote.||$250.00 USD (per sample)|
|Whole Genome de novo Assembly||When there is a lack of reference genome, it is necessary to perform a de novo assembly. The genome assembly consists on fitting together all the reads from a sequencing to generate a set of contigs that make up a genome. *Price for a genome <10MB. For a genome >10MB, please, inquire.||$700.00 USD (per sample)|
|Genome Mapping||Genome mapping is a technique that aligns read to a referenced genome delivering an assembled genome. This techique is useful for re-sequencing or variant analysis. *Price for a genome <10MB. For a genome >10MB, please, inquire.||$200.00 USD (per sample)|
|Custom scripting and special projects||Due to the wide range of Bioinformatics Services that can be offered, it is difficult to elaborate a closed list for all the possibilities. For this reason, a Bioinformatics Service or Data Analysis could be designing specially for you. We will study your Project carefully and send you a Proposal totally adapted to your requirements. In our website we described some examples of the Services th...||Inquire|
|Metagenomic Analysis||Extended 16S/18S/ITS Analysis provides taxonomic characterization of the microbial community and relative quantification of the classified microoganisms. The extended service also include functional content prediction of the community and diversitiy analyisis of the population.||$120.00 USD (per sample)|