SNP / Indel Mapping


Refers to SNPs (single nucleotide polymorphisms) or Indels (insertions or deletions) that have been mapped to a physical location in the NCBI RefSeq database. SNP / Indel mapping also refers to mapping variation to a particular disease or pathway.

Providers offering SNP / Indel Mapping (found 22)


Parseq Lab

Czechia

Parseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment

We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis

Collaborations: genomic research labs, sequencing facilities, academic and research institutions.

Years in service: 7

Other services offered by Parseq Lab:

Service Description Price

omics2view.consulting GbR

Germany

No other technology has been advancing the field of molecular biology and microbiology more in the last decade than next-generation sequencing (NGS). Facilitating analysis of genomic and transcriptomic material in ever more detail, NGS has become a versatile and indispensable method in ecological and medical research.

The omics2view.consulting GbR is an expert company in life science data mining. We offer high expertise in bioinformatics and biometric NGS-data analysis. Regardless of whether personalized, academic or clinical study, we can accompany your project from planing of the study design, via bioinformatic and statistical data analysis to publication of results in scientific journals. Our team combines professional consulting in NGS with high experience in diagnostics, molecular biology, (clinical) microbiology, ecology and life science.

Other services offered by omics2view.consulting GbR:

Service Description Price
Transcriptome Mapping Inquire
Other Services complex Statistics Inquire
Other Services Viromics Inquire
Other Services Amplicon analysis Inquire
Other Services Custom scripting Inquire
Other Services qPCR & FACS data Inquire
Other Services Molecular diagnostics Inquire
Other Services Metatranscriptomics Inquire
Exome Analysis Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Genome Annotation Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Variant Annotation Inquire
Microbiome Analysis 16s rNDA/rRNA Inquire

Igenbio.Inc

United States of America

Expertise:

  • Genome ORF calling: Eukaryotes and Prokaryote Genomes
  • Annotations
  • Pathway Analysis
  • Metabolic Reconstruction
  • SNP Analysis
  • Comparative Genomics
  • Integration of GWAS expression data onto genomes and pathways

Infrastructure:

Data is stored in house with a dedicated server room with 24/7 security. We compute using our proprietary algorithms internally and curate the genomes with comparative analysis platform. We have over 2,600 genomes in the data base which are manually curated. Access is provided via web or server access.

Other services offered by Igenbio.Inc:

Service Description Price
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
Genome Annotation Inquire
Methylation Analysis Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Whole Genome de novo Assembly Inquire

Diagnomics

United States of America

Diagnomics Inc. is a biotech company in the heart of the Biotech Beach, in San Diego California. The company focuses on products and services for personalized medicine based on personal genome and cutting edge bioinformatics analysis. Diagnomics provides complete personal genome sequencing and bioinformatics solutions to biomedical researchers, physicians and individuals seeking to understand the genetic influence of personal health and disease.

Expertise:

We aim to provide the highest possible quality genome sequencing service and annotation solutions from next generation sequencing (NGS) technology to guide personalized medicine based on an individuals' genetic information.

Infrastructure:

We are taking high-throughput computation and informatics seriously, and are constantly upgrading our server farm and softwares to enable cutting-edge bioinformatics for state-of-the-art genomic analysis. To that end, we house our infrastructure at a world class data center. Our server farm is located in San Diego, California at the ScaleMatrix facility.

Other services offered by Diagnomics:

Service Description Price
SNP / Indel Mapping Inquire
SNP / Indel Calling Inquire
Targeted Capture Analysis Inquire
Genome Annotation Inquire
Variant Annotation Inquire
Base Calling Inquire

intelliseq

Poland

I approach analytic challenges creatively with the result being novel, statistically significant and reproducible. I have high expertise on differential expression using RNA-seq.

Expertise:

I've been working with whole genome experiments for the last 10 years. I analysed more than 1000 gene expression microarrays (Illumina and Affymetrix, Human, Mouse, Rat and Pig). I analysed RNA-seq samples (total RNA and polyA RNA) from SOLiD 5500xl and Ion Proton, ChIP-seq samples from Illumina HiSEQ and DNA-seq (Exome) samples from Illumina HiSEQ. I developed several tools for functional analysis (see cremag.org) of gene lists.

Infrastructure:

I have almost unlimited access to Amazon EC2 and large server on site (two 8x core Xeon with 216 GB RAM 64GB of SAS disks)

Other services offered by intelliseq:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
Genome Annotation Inquire
Methylation Analysis Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire

Genevia Technologies

Finland

Genevia Technologies provides a wide range of microarray and next generation sequencing data analyses, and bioinformatics services to life science companies and academia. In addition, we offer bioinformatics consulting projects at a fixed price, and genome-wide experiments done in collaboration with the top service providers.

Expertise:

Our expertise is in handling multiple microarray (expression, copy number, ChIP, methylation, etc) and next-gen sequencing (DNA-seq, RNA-seq, MeDIP-seq, ChIP-seq, GRO-seq, etc) data simultaneously and effectively, and combining them with other data such as clinical variables or pathway information. We have experience in most common mammalian systems, but especially in multiple human cancers. We have also worked on data from multiple species of lower eucaryotes and bacteria.

Infrastructure:

We have access to dedicated file storage servers, a computing cluster, a computing grid (of over 1000 CPUs), and cloud computing capabilities.

Visit our homepage to read more about us and our bioinformatics as a service: www.genevia.fi

Other services offered by Genevia Technologies:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Targeted Capture Analysis Inquire
Small RNA Annotation Inquire
Methylation Analysis Inquire
Transcriptome de novo Assembly Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Base Calling Inquire

Biosof LLC

United States of America

Expertise:

Expertise in mainly with plant genomes (wheat, tomato, potato, tobacco, rice, maize, diatoms and arabidopsis).

Infrastructure:

Access to over 800 cores (2.3Ghz and faster) SMP compute cluster. Access to over 50TB of raw storage. Computing infrastructure includes all commonly used bioinformatics software and databases. All computing infrastructure is maintained by a 24/7 IT service.

Other services offered by Biosof LLC:

Service Description Price
Differential Gene Expression Analysis Inquire
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
Read Filtering and Cleaning Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Genome Annotation Inquire
Transcriptome de novo Assembly Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Whole Genome de novo Assembly Inquire

Next Generation Intelligence

NGS provider Italy

NGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.

Expertise:

Our expertise is in the epigenetics field in mouse and human organisms.

Infrastructure:

we will provide FTP access to our storage server to upload raw data and download analyzed data.

Other services offered by Next Generation Intelligence:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Read Filtering and Cleaning Inquire
Exome Analysis Inquire
ChIP-Seq Analysis Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Targeted Capture Analysis Inquire
Genome Annotation Inquire
Small RNA Annotation Inquire
Methylation Analysis Inquire
Transcriptome de novo Assembly Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Base Calling Inquire

ecSeq Bioinformatics

Germany

Bioinformatics solutions

ecSeq provides a variety of bioinformatics service packages suited for most everyday high-throughput sequencing experiments. We are particularly engaged in RNA-seq projects (trancriptomics, differential expression), ncRNA analysis (small RNA-seq, ncRNA annotation) and epigenome sequencing (bilsufilte and methylation analyses). Further bioinformatics solutions include SNP calling, variant annotation & prioritisation as well as development of customized algorithms.

Public workshops and eTrainings

We develop eTrainings and provide workshops for employee training in bioinformatics. Several times a year, we organize well-attended workshops on selected topics in next-generation sequencing data analysis. Test datasets are used for getting started in applying and developing bioinformatic tools.

Topics covered by our workshops include:

  • RNA-seq bioinformatics
  • Sequencing technolgies
  • Small RNA-seq data analysis
  • Genomic data visualization
  • Perl for bioinformatics
  • Programming in R

Expertise:

We have long experience in the development and application of bioinformatics methods to high-throughput sequencing experiments. These methods have been successfully applied in various experimental designs ranging from ncRNA and mRNA sequencing to genome/epigeome analyses. We have worked with sequencing data from humans, lifestock species (chicken, cow, turkey), plants and bacteria. Our employees are continuously involved in projects from national and international consortia, like the International Cancer Genome Consortium (ICGC) or the Leipzig Research Centre for Civilization Diseases (LIFE).

Infrastructure:

We have access to moderate computation resources allowing us to process ~120GB sequence data per week.

Other services offered by ecSeq Bioinformatics:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Read Filtering and Cleaning Inquire
Exome Analysis Inquire
ChIP-Seq Analysis Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Small RNA Annotation Inquire
Methylation Analysis Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire

Leucine Rich Bio

India

Leucine Rich Bio has been selected as the award recipient for the"2016 Frost & Sullivan India Award for Enabling Technology in the Cloud-enabled Genomics Industry, APAC"

Leucine Rich Bio Private Limited is a Bioinformatics driven company based in the Silicon Valley of India, Bangalore, specializing in Next Generation Sequencing (NGS) Data Analysis & Interpretation. Our area of focus is in Human Genome Interpretation, especially for clinical and research use. We use advances in the area of Computer Science, Information Science, Data Management, Statistics and Systems Biology to solve complex problems in Genomics. We envision using cutting edge big data approaches along with machine learning algorithms to delve deeper into the understanding of the human genome and develop novel solutions to drug discovery.

At Leucine Rich Bio we have in-depth knowledge on Cancer Genomics, Genetic Conditions caused by Rare Variants and Drug Response. We have collated information on Genetic Variants, Mendelian Inheritance, Genome Wide Association Studies and Pharmacogenomics data. Our in-house curated database (LRB – Human Genome Variation Database) is developed that cross-checks all information with the original scientific literature to ensure data is accurate, clinically relevant and up to date. The database provides functional information, mutation impact on disease, drug response and variant impact on protein structure and functions, with its relevant references.

Our pipelines are tailored to accurately generate a report in a clinically relevant time frame. Our proprietary platform AGIS based customized report translates complex genomic data into clinically relevant and actionable biological information. At Leucine Rich Bio we help clinicians appreciate the value of Personalized Medicine. Our in house curated database LRB-HGVD is tailored to provide variant functional information to AGIS

Our dynamic genome interpretation service provides researchers in pharmaceutical industry and top research labs worldwide with choice of bioinformatics suite to interpret, analyse and act on relevant information derived from ever evolving NGS data.

Other services offered by Leucine Rich Bio:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
Read Filtering and Cleaning Leucine Rich Bio offers Read filtering, cleaning and quality control analysis. We also offer statistical and heuristic analysis. Literature mining services are also provided. As we are Bangalore (India) based company, we offer very competitive pricing. $75.00 USD (per sample)
Exome Analysis Inquire
ChIP-Seq Analysis Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
SNP/SV/CNV Discovery Inquire
Targeted Capture Analysis Inquire
Genome Annotation Inquire
Small RNA Annotation Inquire
Transcriptome de novo Assembly Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire
Whole Genome de novo Assembly Inquire
Microbiome Analysis Inquire

Station X

United States of America

We offer a powerful genomics software platform that makes various bioinformatics tasks fairly straightforward to perform and deliver to customers. We also wrap this product with various service offerings for folks interested in one-off projects that deliver results rather than just subscribing to a software solution and then do the work themselves. We are comfortable with both scenarios. We are well versed in working with RNA-Seq, Genomes, Exomes, targeted panels, miRNA-Seq, Copy Number, Gene Expression, Protein Expression, and DNA Methylation from the level of raw sequencing reads or chip data all the way through to statistically-driven and knowledge-driven interpretations.

Expertise:

We are experienced in developing bioinformatics pipelines, providing data management solutions, analyzing the data using statistical methods and knowledge driven methods, and delivering professional-grade results. We are most familiar with human genomics projects, but have experience with other organisms as well. We are most focused on supporting sequencing projects, but are very capable of supporting array and PCR-based projects as well.

Infrastructure:

We leverage Amazon Web Services for most of our storage (EBS & S3) and computational resources (EC2). We are not frivolous about security, and we can provide you with security documentation to demonstrate how we leverage cloud resources while keeping best-in-class security. We also have powerful 16-core machines in our own private cloud that we leverage for service projects as well.

Years in service: 8

Other services offered by Station X:

Service Description Price
Differential Gene Expression Analysis $1655.00 USD (flat price)
Transcriptome Mapping $100.00 USD (per sample)
Comparative Genome Analysis $2500.00 USD (flat price)
Custom scripting and special projects $275.00 USD (per hour)
Other Services Visualizations, Report Generation, Customizations to our platform, Training, Scientific support, Presentation support, etc. $300.00 USD (per hour)
Read Filtering and Cleaning $115.00 USD (per sample)
Exome Analysis $2500.00 USD (flat price)
Small RNA Mapping $100.00 USD (per sample)
SNP / Indel Mapping $100.00 USD (per sample)
SNP / Indel Calling $100.00 USD (per sample)
SNP/SV/CNV Discovery $100.00 USD (per sample)
Genome Annotation $85.00 USD (per sample)
Small RNA Annotation $85.00 USD (per sample)
Transcriptome Annotation $85.00 USD (per sample)
Variant Annotation $85.00 USD (per sample)

The Africa Genomics Centre and Consultancy (TAGCC) ltd

Kenya

TAGCC is an African company offering services in next generation sequence data analysis and consultancy in genomics. We have implemented a wide range of pipelines to analyse NGS data from various platforms including Illumina and 454. We support design and implementation of genomics and NGS based projects.

Years in service: 4

Other services offered by The Africa Genomics Centre and Consultancy (TAGCC) ltd:

Service Description Price
Differential Gene Expression Analysis We Identify differentially expressed and significant genes from RNA-seq data. Our workflow includes QC clean up, removal of ribosomal RNA contamination followed by denovo or reference based mapping. RPKM/FPKM-based quantitation. $80.00 USD (per sample)
Transcriptome Mapping Map mRNAs to either the reference or the assembled genome. $110.00 USD (per sample)
Other Services Admixture modelling and SNP phylogenetics. Use genetic data to infer the structure and evolutionary history of populations (Time is dependent on VCF/PED file size) $225.00 USD (per hour)
Read Filtering and Cleaning QC analysis, trimming and low quality reads removal. Both Raw and QC trimmed Fastq files will be made available. $24.00 USD (per sample)
Exome Analysis We analyse full exomes from raw sequence data through the process of cleaning, alignment, variant calling to analysis ready vcf file with variants effects summary. $125.00 USD (per sample)
SNP / Indel Mapping Map SNPs and Indels. $110.00 USD (per sample)
Genome Mapping Alignment of NGS data to reference genome and generate mapping statistics $60.00 USD (per sample)
Metagenomic Analysis Generating publication ready Phylogenetic trees, Alpha and beta-diversity, rarefactions, rank abundance plots, relative abundance bar plots, with integration of meta-data, etc. Inquire
SNP / Indel Calling Identify and qualify SNPs and Indels. $110.00 USD (per sample)
Base Calling Demultiplex data and convert BCL or SFF files to FASTQ files. (Time is dependent on file size) $120.00 USD (per hour)

Strand Life Sciences

India

Strand Life Sciences is a technology innovation company that has pioneered the practice of scientific intelligence in health sciences. Strand was established in 2000, with a founding theme “Algorithms for Life”. The company is an academic-spin of in India, founded by four Computer Scientists - Dr. Vijay Chandru, Dr. Ramesh Hariharan, Dr.V. Vinay, and Dr. Swamy Manohar. Since then, we have established a strong portfolio of products for biological systems research and for diagnosis and treatment of diseases. Over 2000 scientific laboratories and 100 hospitals across the world are our clients. Now, we have entered a new era guiding medical decisions using molecular insights with a new theme ‘New Generation Healthcare’.

Strand NGS-Formerly Avadis® NGS is Strand’s flagship product for analysis, management and visualization of next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, ChIP-Seq, MeDIP-Seq and Methyl-Seq experiments. We provide bioinformatics services using Strand NGS and price is dependent on man hours, number of samples and other factors. Please consult us for more details sales@strandngs.com

Years in service: 8

Other services offered by Strand Life Sciences:

Service Description Price
Differential Gene Expression Analysis $500.00 USD (per sample)
Exome Analysis $500.00 USD (per sample)
ChIP-Seq Analysis Inquire $500.00 USD (per sample)
SNP / Indel Mapping $500.00 USD (per sample)
SNP / Indel Calling $500.00 USD (per sample)
SNP/SV/CNV Discovery $500.00 USD (per sample)
Methylation Analysis $500.00 USD (per sample)

STAB VIDA

NGS provider Portugal

Years in service: 6

Other services offered by STAB VIDA:

Service Description Price
Differential Gene Expression Analysis Deliverables include the raw data fastq seq files, transcriptome mapping, gene expression analysis and a report (including Q score, number of reads, coverage, etc) $200.00 USD (per sample)
SNP / Indel Mapping Deliverables include the raw data fastq seq files, consensus sequence, list of genetic variants and a report (including Q score, number of reads, coverage, etc) $200.00 USD (per sample)
Genome Mapping Deliverables include the raw data fastq seq files, consensus sequence and a report (including Q score, number of reads, coverage, etc) $200.00 USD (per sample)
Whole Genome de novo Assembly Deliverables include the raw data fastq seq files, list of contigs and a report with results (including Q score, number of reads, coverage etc) $200.00 USD (per sample)
Base Calling Deliverables include the raw data fastq seq files Inquire

Rajesh Mahato

India

Next Generation Sequencing (NGS) is a key technological tool that has emerged in the past decades. NGS is known to provide a cost-effective and time-saving technological advancement in nucleotide sequencing activities, and has found its application in several sectors of the life-sciences domain at large. At ArrayGen, we focus on developing niche NGS data analysis tools, protocols, and custom workflows, which can expedite your research. We also provide data analysis services where we draw meaningful insights from standard or custom raw nucleotide sequence data.

ArrayGen specializes in Genomics data analysis and research, as we believe in the level of precision, predictability, benchmark-ability, and data analysis capability of genomics data over other forms of biological data. ArrayGen constantly strives to develop new solutions, and plug the existing gaps in the technological advancement of the field.

Expertise:

We have worked with wide variety of organism like Human, Arabidopsis, viral and bacterial genomes which provide us expertise in analysing NGS data.

Infrastructure:

We have our own in-house server as well as we also provide FTP access to our storage server to upload raw data and download analyzed data.

Years in service: 5

Other services offered by Rajesh Mahato:

Service Description Price
Differential Gene Expression Analysis Read Quality Report before and after trimming,Mapping report,Differential expressed Genes(Upregulated & Downregulated),Functional analysis(GO & Pathway), GO and Pathway Enrichment analysis report,heatmap and volcano plots, Pathway network analysis report,custom analysis as per the client request $200.00 USD (per sample)
Transcriptome Mapping Complete mapping reports $50.00 USD (per sample)
Comparative Genome Analysis comparative analysis/syntenic region detection/vizualization $150.00 USD (per sample)
Custom scripting and special projects Complete Algorithm detection/GUI database or software for biologist/Automated scripts pipeline for NGS data analysis to process larger datasets/Any algorithm as per the paper published Inquire
Other Services We provide software development/shell scripts for your NGS data analysis as per your requirement. This will save time and money if you would like to perform any number of Data analysis. Inquire
Other Services We also provide complete custom microarray chip designing, microarray data analysis and other bioinformatics services Inquire
Other Services ArrayGen also provides complete Industrial based training in all NGS applications - RNASeq/DNASeq/Chipseq/metagenomics/WGS denovo assembly/Methylseq/LncRNA etc please visit at www.arraygen.com to know more details Inquire
Other Services ArrayGen also provides complete custom training with your own datasets in all NGS applications - RNASeq/DNASeq/Chipseq/metagenomics/WGS denovo assembly/Methylseq/LncRNA etc please visit at www.arraygen.com to know more details Inquire
Other Services ArrayGen also provides Internship(1/2/3/4/6/12 months) as well as 6 months BICP Industrial for more in depth exposure with bioinformatics program- RNASeq/DNASeq/Chipseq/metagenomics/WGS denovo assembly/Methylseq/LncRNA etc please visit at www.arraygen.com to know more details Inquire
Read Filtering and Cleaning Read filtering Quality report before and after trimming and cleaning $50.00 USD (per sample)
ChIP-Seq Analysis Read Quality Report before and after trimming,Peak enriched report,Peak annotation report,Visualization of enriched peaks,Motif analysis report, Custom analysis as per the client requirement, Also complete Industrial training with custom data available till publication support $150.00 USD (per sample)
Small RNA Mapping miRNA reads mapping report(SAM/BAM) and mapping summary $50.00 USD (per sample)
SNP / Indel Mapping Mapping reports(SAM/BAM) $50.00 USD (per sample)
Metagenomic Analysis Read Quality Report before and after trimming, OTUs identification & Functional,Taxonomic composition and relative abundance,Diversity report,Class/phylum frequency,Heatmap, phylogenetic, Alpha & Beta diversity, custom analysis as per the client request $200.00 USD (per sample)
SNP / Indel Calling All SNP/Indel called report $50.00 USD (per sample)
SNP/SV/CNV Discovery Complete SNP/CNV/SV detection from sequencing data $250.00 USD (per sample)
Targeted Capture Analysis Read Quality Report before and after trimming,Mapping report,variation mutation report,variation annotation,mutation visualization,custom analysis as per client request $150.00 USD (per sample)
Genome Annotation Gene/orf prediction,Functional Annotation(GO and pathway),Visualization/custom analysis $150.00 USD (per sample)
Small RNA Annotation Target Gene prediction and Functional annotation/ miRbase miRNA reference annotation/ functional analysis GO and pathway enrichment for know and novel miRNA $150.00 USD (per sample)
Methylation Analysis Read Quality Report before and after trimming,Mapping report,Methylated and unmethylated regions,Differential methylated regions, Annotation,vizualization,custom analysis as per client request $150.00 USD (per sample)
Transcriptome de novo Assembly Raw data QC, Transcript assembled sequence and statistics report, Differential Gene Expression(UpRegulated & DownRegulated), Gene Prediction & functional annotation, GO and pathway enrichment analysis report, different plots(heatmap,volcano plots etc), Pathway network analysis and complete custom support. $200.00 USD (per sample)
Transcriptome Annotation Functional annotation Gene ontology and pathway / gene feature assignment $50.00 USD (per sample)
Variant Annotation Complete variations annotation like gene feature/OMIM/polyphen & sift score/upstream & downstream etc $100.00 USD (per sample)
Whole Genome de novo Assembly Read Quality Report before and after trimming,Assembly and statistics report,Repeat masking,Gene prediction and functional annotation,Vizualization using circos,custom analysis as per client request $200.00 USD (per sample)

SciBerg

Germany

We offer computational analyses of Next-Generation Sequencing data (Illumina and Ion Torrent platforms), including RNA-seq, small RNA-seq, DNA-seq, Bisulfite-seq and ChIP-seq. Our bioinformatics support can be fully customized for your research needs, the scope and objectives of the study. We apply only up-to-data well-proven software and pipelines working under Unix/Linux environment. Optionally, our experts can help to interpret the obtained results from the scientific point of view, provided some of them are working in a close research field.

Other services offered by SciBerg:

Service Description Price
Differential Gene Expression Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Exome Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
ChIP-Seq Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
SNP/SV/CNV Discovery Inquire
Genome Annotation Inquire
Small RNA Annotation Inquire
Methylation Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire

HybridStat Predictive Analytics

Greece

HybridStat is a company bringing together a team of highly qualified and motivated scientists and developers, whose expertise spans a variety of statistics and computer science domains. Main HybridStat’s services are centered on bioinformatics, biostatistics and analytics of high-throughput data derived from modern biological technologies such as Next Generation Sequencing (NGS), DNA microarrays and Mass Spectrometry. In addition, HybridStat offers customized software solutions regarding the above.

Regarding NGS, HybridStat offers a variety of one-stop shop data analysis and analytics services, spanning from genome alignments and preprocessing of raw short read fragments, up to analytical and specialized reports and figures describing the results of various NGS protocols including RNA-Seq (quality control, differential expression and splicing analysis, biochemical pathway enrichments etc.), ChIP-Seq (data normalization and peak calling, gene-binding site associations, methylation profiles, motif finding etc.), Whole Exome and Whole Genome Sequencing (data preprocessing, variant calling, filtering, annotation and interpretation, etc.) and Single Cell Sequencing data analysis, using both open source and optimized proprietary pipelines.

HybridStat, can also offer complete support to your organization through its advanced Whole Exome Sequencing analytics platform Clingon (www.clingon-mds.com). Clingon is a complete, integrated one-stop clinical genomics and medical decision support platform which performs data analysis from raw data up to the generation of clinical reports. It uniquely integrates and curates a handful of resources regarding gene-disease and gene product-drug associations as well as curated variant annotation data towards more timely and accurate results and the optimal design of personalized treatment plans.

Years in service: 4

Other services offered by HybridStat Predictive Analytics:

Service Description Price
Differential Gene Expression Analysis A fully descriptive and interactive report is provided. $300.00 USD (flat price)
Comparative Genome Analysis $60.00 USD (per hour)
Custom scripting and special projects $70.00 USD (per hour)
Other Services $70.00 USD (per hour)
Read Filtering and Cleaning $25.00 USD (per sample)
Read Filtering and Cleaning $20.00 USD (per sample)
Read Filtering and Cleaning $30.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $200.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $150.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $170.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $85.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $70.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $100.00 USD (per sample)
SNP / Indel Mapping $40.00 USD (per sample)
SNP / Indel Mapping $25.00 USD (per sample)
SNP / Indel Mapping $30.00 USD (per sample)
Genome Mapping $25.00 USD (per sample)
Genome Mapping $20.00 USD (per sample)
Genome Mapping $30.00 USD (per sample)
SNP / Indel Calling $50.00 USD (per sample)
SNP / Indel Calling $45.00 USD (per sample)
SNP / Indel Calling $40.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $60.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $50.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $40.00 USD (per sample)
Whole Genome de novo Assembly $1000.00 USD (flat price)

Omega Bioservices

NGS provider United States of America

Our facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.

Years in service: 6

Other services offered by Omega Bioservices:

Service Description Price
Differential Gene Expression Analysis Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. $56.00 USD (per sample)
Differential Gene Expression Analysis Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. $110.00 USD (per sample)
Transcriptome Mapping Map mRNAs to either the reference or the assembled genome. $332.00 USD (per sample)
Custom scripting and special projects We are open to your custom analysis projects. Set up a call with our Project Scientist team today to discuss your needs and obtain a quote. $500.00 USD (per sample)
Read Filtering and Cleaning Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. $110.00 USD (per sample)
Exome Analysis Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. $332.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. $332.00 USD (per sample)
Small RNA Mapping Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $221.00 USD (per sample)
SNP / Indel Mapping Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Mapping Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. $110.00 USD (per sample)
Metagenomic Analysis Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. $551.00 USD (per sample)
SNP / Indel Calling Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
SNP/SV/CNV Discovery Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Targeted Capture Analysis Variant call, gene annotation. Provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Annotation Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. $221.00 USD (per sample)
Small RNA Annotation Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $332.00 USD (per sample)
Methylation Analysis The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. $553.00 USD (per sample)
Transcriptome de novo Assembly Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. $553.00 USD (per sample)
Transcriptome Annotation Annotate or predict functions of transcribed genes using well know gene ontology tools. $332.00 USD (per sample)
Variant Annotation Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. $332.00 USD (per sample)
Whole Genome de novo Assembly Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. $3315.00 USD (per sample)
Base Calling Demultiplex data and convert BCL files to FASTQ files $110.00 USD (per sample)

Bioinformatics Unit, Panacea Biosciences

NGS provider India

Other services offered by Bioinformatics Unit, Panacea Biosciences:

Service Description Price
Custom scripting and special projects Based on project requirements. $15.00 USD (per hour)
Read Filtering and Cleaning $40.00 USD (per sample)
Exome Analysis End to End Exome-Seq Data Analysis $75.00 USD (per sample)
ChIP-Seq Analysis we present step-by-step guidelines for the computational analysis of ChIP-seq data. We address all the major steps in the analysis of ChIP-seq data: sequencing depth selection, quality checking, mapping, data normalization, assessment of reproducibility, peak calling, differential binding analysis, controlling the false discovery rate, peak annotation, visualization, and motif analysis. $80.00 USD (per sample)
Genome Mapping Available only for Human, Mouse and available sequenced geneomes $75.00 USD (per sample)
SNP/SV/CNV Discovery End to End variant analysis $70.00 USD (per sample)
Small RNA Annotation Available only for Human, Mouse and available sequenced geneomes $60.00 USD (per sample)
Base Calling Base calling is the process of assigning bases (nucleobases) to chromatogram peaks. One computer program for accomplishing this job is Phred base-calling, which is a widely used basecalling software program by both academic and commercial DNA sequencing laboratories because of its high base calling accuracy. $50.00 USD (per sample)

Meghagen Biosciences Private Limited

NGS provider India

MeghaGen, is a life sciences company providing end-to-end services for NGS sequencing and data analysis.

*We have established and implementing highly scalable pipelines to help researchers with their NGS-related data analysis.

*We help in processing, analyzing and interpreting all application areas spawned by NGS technologies. For example, --Detection of variants in the genomes of all organisms with reference genomes including human, plants, animals and microbes. --RNA-sequencing to detect expression levels of gene, splice variants, lincRNA and miRNA that correlate with a given biological context --Exome and targeted sequencing to discover actionable genetic variants for medical applications. --Microbiome profiling using 16s rRNA or whole-genome metagenome. --Epigenetic changes in biological contexts using ChIP-seq, Methyl-seq, BS-seq. --De novo sequencing and assembly of genomes or organism without a reference.

*We can work together to develop the analysis pipelines for any customized applications that you might conceive using cutting edge cloud computing.

*Analysis comes with publication-ready plots and tables.

*MeghaGen uses AWS cloud based platform that is super-optimized for data analysis and data archival.

*We strive to ensure that our clients enjoy the highest quality and most cost-effective bioinformatics solutions.

Years in service: 4

Other services offered by Meghagen Biosciences Private Limited:

Service Description Price
Differential Gene Expression Analysis $150.00 USD (per sample)
Transcriptome Mapping $135.00 USD (per sample)
Comparative Genome Analysis $300.00 USD (per sample)
Custom scripting and special projects Inquire
Other Services Inquire
Read Filtering and Cleaning $30.00 USD (per sample)
Exome Analysis Inquire
ChIP-Seq Analysis $150.00 USD (per sample)
Small RNA Mapping $120.00 USD (per sample)
SNP / Indel Mapping $150.00 USD (per sample)
Genome Mapping $120.00 USD (per sample)
Metagenomic Analysis Inquire
SNP / Indel Calling $120.00 USD (per sample)
SNP/SV/CNV Discovery $300.00 USD (per sample)
Targeted Capture Analysis $125.00 USD (per sample)
Genome Annotation $1250.00 USD (per sample)
Small RNA Annotation $300.00 USD (per sample)
Methylation Analysis Inquire
Transcriptome de novo Assembly $2000.00 USD (per sample)
Transcriptome Annotation $1000.00 USD (per sample)
Variant Annotation $100.00 USD (per sample)
Whole Genome de novo Assembly $3500.00 USD (per sample)
Base Calling Inquire
Microbiome Analysis Inquire

DREAMgenics

NGS provider Spain

We offer bioinformatics analysis services for human and other organisms genomic and transcriptomic NGS data.

  • Our team of experts offers a completely personalized consulting service, including scientific and technical solutions to your needs. We help you to obtain the best results from your analysis.

  • ur collaboration with the most reliable sequencing providers allow us to select the most suitable platform for your project. We also can assist you in all steps prior to sequencing, such us sample and library preparation and quality controls.

  • DREAMgenics bioinformatics framework has been designed to readily adapt to your needs. Capable of integrating your own algorithms, pipelines and databases to complement the data analysis and interpretation.

  • Our analyses identify high quality genomic variants through excellent sensitivity and specificity standards, extracting meaningful biological information and reducing validation process costs. The results will be delivered through a detailed report.

  • We offer the possibility of advanced visualization and interactive review of results through our exclusive DG Reports web application. (Filtering and priorization of variants, Pre-classification of variants, Graphic interface (genomic browser), Statistics and quality controls, Exportable information, Automated generation of reports).

All our procedures meet with the requirements set by the new General Data Protection Regulation.

Years in service: 7

Other services offered by DREAMgenics:

Service Description Price
Differential Gene Expression Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Comparative Genome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Custom scripting and special projects https://www.dreamgenics.com/en/bioinformatics-services/ https://www.dreamgenics.com/en/research-projects/ Inquire
Other Services - Research projects https://www.dreamgenics.com/en/research-projects/ - Bioinformatics software design and developments https://www.dreamgenics.com/en/hd-genome-one-en/ - Gene and/or regions of interest panels, ATAC Seq, Family studies, trio analysis.. https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Read Filtering and Cleaning https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Exome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
ChIP-Seq Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Metagenomic Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP/SV/CNV Discovery https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Targeted Capture Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Methylation Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Variant Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Whole Genome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Base Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Microbiome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire

Bio Knowledge Lab, S.L.

Spain

Bio Knowledge Lab, S.L. is a young biotech & bioinformatics startup from Cordoba, Spain. We work giving support to public and private research groups and other type of R&D Company. We provide solutions in many areas; basically, we manage any request from the costumer: from molecular biology kits & reagents, laboratory services, image analysis to bioinformatics services.

We are specialist in bioinformatics and data analysis, providing a long list of services. We also elaborate costumed services, because we now the wide range of bioinformatics services and data analysis that can be offered.

In the past we have provided services as:

· Referenced-guided genome assembly · Whole genome de novo assembly · Exome analysis · Sequences annotation · SNPs/Indels analysis · Transcriptome de novo assembly · Transcriptome mapping · RNA-Seq: Quantification and differential expression analysis · sRNA analysis · lncRNA analysis · Basic amplicon 16S/18S/ITS analysis · Extended amplicon 16S/18S/ITS analysis · Whole metagenome analysis · Metatranscriptome analysis · Methylation analysis · Personalized Customer Services

Other services offered by Bio Knowledge Lab, S.L.:

Service Description Price
Differential Gene Expression Analysis RNA-Seq is a technique that has gained popularity among Life Scientists in recent years. Usually, these studies are designed to compare samples under different experimental conditions. RNA-Seq provides information about what is happening inside a cell, tissue or any other biological sample, but this raw information is massive and complex. $200.00 USD (per sample)
Transcriptome Mapping One of the most popular and useful procedures in Bioinformatics, Mapping, is used as basic step in larger analysis. It consists in the positioning of sequences over a larger sequence, typically a Genome. Its applications are mainly quantification, assembly, variant analysis, alternative splicing study or localization of sequences among other. $150.00 USD (per sample)
Custom scripting and special projects Due to the wide range of Bioinformatics Services that can be offered, it is difficult to elaborate a closed list for all the possibilities. For this reason, a Bioinformatics Service or Data Analysis could be designing specially for you. We will study your Project carefully and send you a Proposal totally adapted to your requirements. In our website we described some examples of the Services th... Inquire
Exome Analysis Whole Exome Sequencing presents a powerful too to study relevant genetic variants if protein-coding sequences of a genome, due to their relations with heritable phenotypes, including genetic disorders. $250.00 USD (per sample)
Small RNA Mapping small RNA libraries are mapped to a reference genome. *From our company, Bio Knowledge Lab, S.L. can provide a complete small RNA Analysis that includes mapping, annotation and also discovering of small RNA. Contact us for more information and for a quote. $250.00 USD (per sample)
SNP / Indel Mapping SNPs and Indels are genomic variations that, without being mutations, can be related to diverse phenotypes. The detection of these of these variations could provide information about diseases with a genetic component, recombination, etc. $250.00 USD (per sample)
Genome Mapping Genome mapping is a technique that aligns read to a referenced genome delivering an assembled genome. This techique is useful for re-sequencing or variant analysis. *Price for a genome <10MB. For a genome >10MB, please, inquire. $200.00 USD (per sample)
Metagenomic Analysis Basic Amplicon 16S/18S/ITS Analysis supplies taxonomic characterization of the microbial community and relative quantification of the classified microorganisms. $65.00 USD (per sample)
Metagenomic Analysis Extended 16S/18S/ITS Analysis provides taxonomic characterization of the microbial community and relative quantification of the classified microoganisms. The extended service also include functional content prediction of the community and diversitiy analyisis of the population. $120.00 USD (per sample)
SNP / Indel Calling SNP/Indel calling is a procedure for identifying genomic variations given a High Throughput Sequencing datase. These variations, without being mutations, can be related to diverse phenotypes. $350.00 USD (per sample)
Genome Annotation Genome annotation is the process of indentying regins of interest in a DNA sequence in order to assign specific with descriptive information about structure or function. Through this service it is provide an integrated analysis, generating an exhaustive sequences annotation. $350.00 USD (per sample)
Small RNA Annotation small RNA libraries are mapped to a reference genome and annotated using several databases . *From our company, Bio Knowledge Lab, S.L. can provide a complete small RNA Analysis that includes mapping and annotation and also discovering of small RNA. Contact us for more information and for a quote. $250.00 USD (per sample)
Methylation Analysis The study of Methylation requires a Bisulfite Pyrosenquencing Procedure because is the only technique that can detect Cytosine Methylation at this level nowadays. A knowledge of the different Methylation Patterns under different conditions can clarify how the ambient can influence the cell functionality. $300.00 USD (per sample)
Transcriptome de novo Assembly De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without a reference genome. This process is helpful for RNA-Seq data treatment as the full transcriptome is built for Forthcoming Research (Functional Annotation, Mapping, etc). $500.00 USD (per sample)
Whole Genome de novo Assembly When there is a lack of reference genome, it is necessary to perform a de novo assembly. The genome assembly consists on fitting together all the reads from a sequencing to generate a set of contigs that make up a genome. *Price for a genome <10MB. For a genome >10MB, please, inquire. $700.00 USD (per sample)
Microbiome Analysis Whole Genome Sequencing (WGS) of a Microbial Sample will generate read sequences from the Genome of all the organisms included in the Analyzed Sample. Whole Metagenome Analysis provides classification of species level taxonomy and even it allows to analyze the metabolic pathway activities from the Microbial samples. $1500.00 USD (per sample)
Microbiome Analysis Metatranscriptomics allows to quantify Gene Expression from all the Microbial sample providing a large amount of information about functions or activated pathways, showing a complete and general view of the microbial community dynamics. $1500.00 USD (per sample)