SNP / Indel Calling


SNP / Indel calling is one the most frequently performed type of next generation sequencing analysis. Once reads are aligned to a reference genome, bases that differ from the reference are identified. Typically an associated confidence score is assigned as next generation sequencing data will have errors, requiring each base to be read several times. Several algorithms that use quality score to differentiate whether a difference is a SNP / Indel or error exist. The MAQ variant calling and alignment algorithm first maps shotgun reads to a reference genome, using quality scores to derive calls. Error probabilities are derived using raw sequence data, mapping quality, quality scores and models for correlating errors at a specific site.

Providers offering SNP / Indel Calling (found 28)


Geno-plex Bioinformatics Services

Switzerland

We offer tailored bioinformatics services (mainly NGS data analysis) to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software.

We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently.

We replicate recommended analysis pipelines (best practice) or develop novel ones but we always emphasize biological interpretation of your data.

Years in service: 6

Other services offered by Geno-plex Bioinformatics Services:

Service Description Price
Targeted Capture Analysis We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)
Variant Annotation We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)
SNP/SV/CNV Discovery We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)
Custom scripting and special projects We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... Inquire
Genome Mapping We replicate recommended analysis pipelines (best practice) using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently. Inquire
SNP / Indel Calling We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)
Transcriptome Mapping We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)
Other Services Primer design for efficient multiplex PCR reactions Inquire
Exome Analysis We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses i... $150.00 USD (per sample)

Parseq Lab

Czechia

Parseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment

We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis

Collaborations: genomic research labs, sequencing facilities, academic and research institutions.

Years in service: 8

Other services offered by Parseq Lab:

Service Description Price

Varstation

Brazil

We offer a solid bioinformatics foundation for laboratories that want to start or scale their capacity to perform genetic testing while following the best practices from ACMG, AMP and CAP.

End-to-end and automated processing Evaluation of quality parameters, mapping, multiple variant callers, database annotation and automatic pre-classification according to ACMG and AMP guidelines.

Support for clinical interpretation More than 200 genetic mutations databases are incorporated, including data for germline, somatic and structural variants (CNV and Fusion).

Robust filters Filtering engine based on all annotated mutation data, including human phenotypes, the patient's clinical history and diseases (OMIM / UniProt).

Clear and structured results Relevant clinical information to support the medical report, such as patient, variants and therapies info. We provide a Datavis feature to share results with partners.

Years in service: 4

Other services offered by Varstation:

Service Description Price
Exome Analysis Exome analysis inside Varstation using the gold standard methodologies, including disease and HPO correlation and filtering. $65.00 USD (per sample)
SNP/SV/CNV Discovery Complete CNV processing from sequencing data to final report using know CNV baseline $30.00 USD (per sample)
SNP / Indel Mapping End-to-end tool, from the sequencing raw file to the variant report $30.00 USD (per sample)
SNP / Indel Calling End-to-end tool, from the sequencing raw file to the variant report $30.00 USD (per sample)
Variant Annotation Variant annotation using multiple VCF callers for any pipeline using our annotation algorithm that includes more than 200 genetic mutations databases, $30.00 USD (per sample)

Igenbio.Inc

United States of America

Expertise:

  • Genome ORF calling: Eukaryotes and Prokaryote Genomes
  • Annotations
  • Pathway Analysis
  • Metabolic Reconstruction
  • SNP Analysis
  • Comparative Genomics
  • Integration of GWAS expression data onto genomes and pathways

Infrastructure:

Data is stored in house with a dedicated server room with 24/7 security. We compute using our proprietary algorithms internally and curate the genomes with comparative analysis platform. We have over 2,600 genomes in the data base which are manually curated. Access is provided via web or server access.

Years in service: 6

Other services offered by Igenbio.Inc:

Service Description Price
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
SNP / Indel Calling Inquire
Genome Mapping Inquire
Variant Annotation Inquire
Comparative Genome Analysis Inquire
Metagenomic Analysis Inquire
Genome Annotation Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
Whole Genome de novo Assembly Inquire

Diagnomics

United States of America

Diagnomics Inc. is a biotech company in the heart of the Biotech Beach, in San Diego California. The company focuses on products and services for personalized medicine based on personal genome and cutting edge bioinformatics analysis. Diagnomics provides complete personal genome sequencing and bioinformatics solutions to biomedical researchers, physicians and individuals seeking to understand the genetic influence of personal health and disease.

Expertise:

We aim to provide the highest possible quality genome sequencing service and annotation solutions from next generation sequencing (NGS) technology to guide personalized medicine based on an individuals' genetic information.

Infrastructure:

We are taking high-throughput computation and informatics seriously, and are constantly upgrading our server farm and softwares to enable cutting-edge bioinformatics for state-of-the-art genomic analysis. To that end, we house our infrastructure at a world class data center. Our server farm is located in San Diego, California at the ScaleMatrix facility.

Other services offered by Diagnomics:

Service Description Price
Targeted Capture Analysis Inquire
SNP / Indel Calling Inquire
SNP / Indel Mapping Inquire
Genome Annotation Inquire
Variant Annotation Inquire
Base Calling Inquire

intelliseq

Poland

I approach analytic challenges creatively with the result being novel, statistically significant and reproducible. I have high expertise on differential expression using RNA-seq.

Expertise:

I've been working with whole genome experiments for the last 10 years. I analysed more than 1000 gene expression microarrays (Illumina and Affymetrix, Human, Mouse, Rat and Pig). I analysed RNA-seq samples (total RNA and polyA RNA) from SOLiD 5500xl and Ion Proton, ChIP-seq samples from Illumina HiSEQ and DNA-seq (Exome) samples from Illumina HiSEQ. I developed several tools for functional analysis (see cremag.org) of gene lists.

Infrastructure:

I have almost unlimited access to Amazon EC2 and large server on site (two 8x core Xeon with 216 GB RAM 64GB of SAS disks)

Other services offered by intelliseq:

Service Description Price
Transcriptome Annotation Inquire
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Differential Gene Expression Analysis Inquire
Variant Annotation Inquire
Transcriptome Mapping Inquire
Metagenomic Analysis Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Small RNA Mapping Inquire
Genome Annotation Inquire

Genevia Technologies

Finland

Genevia Technologies provides a wide range of microarray and next generation sequencing data analyses, and bioinformatics services to life science companies and academia. In addition, we offer bioinformatics consulting projects at a fixed price, and genome-wide experiments done in collaboration with the top service providers.

Expertise:

Our expertise is in handling multiple microarray (expression, copy number, ChIP, methylation, etc) and next-gen sequencing (DNA-seq, RNA-seq, MeDIP-seq, ChIP-seq, GRO-seq, etc) data simultaneously and effectively, and combining them with other data such as clinical variables or pathway information. We have experience in most common mammalian systems, but especially in multiple human cancers. We have also worked on data from multiple species of lower eucaryotes and bacteria.

Infrastructure:

We have access to dedicated file storage servers, a computing cluster, a computing grid (of over 1000 CPUs), and cloud computing capabilities.

Visit our homepage to read more about us and our bioinformatics as a service: www.genevia.fi

Other services offered by Genevia Technologies:

Service Description Price
Methylation Analysis Inquire
SNP / Indel Calling Inquire
Base Calling Inquire
ChIP-Seq Analysis Inquire
Targeted Capture Analysis Inquire
Variant Annotation Inquire
Small RNA Mapping Inquire
Comparative Genome Analysis Inquire
Small RNA Annotation Inquire
Transcriptome Annotation Inquire
Custom scripting and special projects Inquire
SNP/SV/CNV Discovery Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Read Filtering and Cleaning Inquire
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Metagenomic Analysis Inquire
Transcriptome de novo Assembly Inquire

Biosof LLC

United States of America

Expertise:

Expertise in mainly with plant genomes (wheat, tomato, potato, tobacco, rice, maize, diatoms and arabidopsis).

Infrastructure:

Access to over 800 cores (2.3Ghz and faster) SMP compute cluster. Access to over 50TB of raw storage. Computing infrastructure includes all commonly used bioinformatics software and databases. All computing infrastructure is maintained by a 24/7 IT service.

Other services offered by Biosof LLC:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Differential Gene Expression Analysis Inquire
Variant Annotation Inquire
SNP/SV/CNV Discovery Inquire
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
Transcriptome de novo Assembly Inquire
Whole Genome de novo Assembly Inquire
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
Genome Mapping Inquire
Genome Annotation Inquire

Next Generation Intelligence

NGS provider Italy

NGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.

Expertise:

Our expertise is in the epigenetics field in mouse and human organisms.

Infrastructure:

we will provide FTP access to our storage server to upload raw data and download analyzed data.

Other services offered by Next Generation Intelligence:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Base Calling Inquire
Targeted Capture Analysis Inquire
Differential Gene Expression Analysis Inquire
Genome Mapping Inquire
Small RNA Mapping Inquire
Exome Analysis Inquire
Transcriptome Mapping Inquire
Genome Annotation Inquire
Transcriptome Annotation Inquire
Custom scripting and special projects Inquire
Transcriptome de novo Assembly Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Small RNA Annotation Inquire
SNP/SV/CNV Discovery Inquire
Methylation Analysis Inquire
ChIP-Seq Analysis Inquire
Variant Annotation Inquire

ecSeq Bioinformatics

Germany

Bioinformatics solutions

ecSeq provides a variety of bioinformatics service packages suited for most everyday high-throughput sequencing experiments. We are particularly engaged in RNA-seq projects (trancriptomics, differential expression), ncRNA analysis (small RNA-seq, ncRNA annotation) and epigenome sequencing (bilsufilte and methylation analyses). Further bioinformatics solutions include SNP calling, variant annotation & prioritisation as well as development of customized algorithms.

Public workshops and eTrainings

We develop eTrainings and provide workshops for employee training in bioinformatics. Several times a year, we organize well-attended workshops on selected topics in next-generation sequencing data analysis. Test datasets are used for getting started in applying and developing bioinformatic tools.

Topics covered by our workshops include:

  • RNA-seq bioinformatics
  • Sequencing technolgies
  • Small RNA-seq data analysis
  • Genomic data visualization
  • Perl for bioinformatics
  • Programming in R

Expertise:

We have long experience in the development and application of bioinformatics methods to high-throughput sequencing experiments. These methods have been successfully applied in various experimental designs ranging from ncRNA and mRNA sequencing to genome/epigeome analyses. We have worked with sequencing data from humans, lifestock species (chicken, cow, turkey), plants and bacteria. Our employees are continuously involved in projects from national and international consortia, like the International Cancer Genome Consortium (ICGC) or the Leipzig Research Centre for Civilization Diseases (LIFE).

Infrastructure:

We have access to moderate computation resources allowing us to process ~120GB sequence data per week.

Other services offered by ecSeq Bioinformatics:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Genome Mapping Inquire
Variant Annotation Inquire
Small RNA Mapping Inquire
Transcriptome Mapping Inquire
Small RNA Annotation Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
Differential Gene Expression Analysis Inquire
Exome Analysis Inquire
SNP/SV/CNV Discovery Inquire

Station X

United States of America

We offer a powerful genomics software platform that makes various bioinformatics tasks fairly straightforward to perform and deliver to customers. We also wrap this product with various service offerings for folks interested in one-off projects that deliver results rather than just subscribing to a software solution and then do the work themselves. We are comfortable with both scenarios. We are well versed in working with RNA-Seq, Genomes, Exomes, targeted panels, miRNA-Seq, Copy Number, Gene Expression, Protein Expression, and DNA Methylation from the level of raw sequencing reads or chip data all the way through to statistically-driven and knowledge-driven interpretations.

Expertise:

We are experienced in developing bioinformatics pipelines, providing data management solutions, analyzing the data using statistical methods and knowledge driven methods, and delivering professional-grade results. We are most familiar with human genomics projects, but have experience with other organisms as well. We are most focused on supporting sequencing projects, but are very capable of supporting array and PCR-based projects as well.

Infrastructure:

We leverage Amazon Web Services for most of our storage (EBS & S3) and computational resources (EC2). We are not frivolous about security, and we can provide you with security documentation to demonstrate how we leverage cloud resources while keeping best-in-class security. We also have powerful 16-core machines in our own private cloud that we leverage for service projects as well.

Years in service: 9

Other services offered by Station X:

Service Description Price
Exome Analysis $2500.00 USD (flat price)
Differential Gene Expression Analysis $1655.00 USD (flat price)
Small RNA Annotation $85.00 USD (per sample)
Small RNA Mapping $100.00 USD (per sample)
SNP / Indel Calling $100.00 USD (per sample)
SNP / Indel Mapping $100.00 USD (per sample)
Transcriptome Annotation $85.00 USD (per sample)
Variant Annotation $85.00 USD (per sample)
Custom scripting and special projects $275.00 USD (per hour)
Comparative Genome Analysis $2500.00 USD (flat price)
SNP/SV/CNV Discovery $100.00 USD (per sample)
Read Filtering and Cleaning $115.00 USD (per sample)
Other Services Visualizations, Report Generation, Customizations to our platform, Training, Scientific support, Presentation support, etc. $300.00 USD (per hour)
Genome Annotation $85.00 USD (per sample)
Transcriptome Mapping $100.00 USD (per sample)

The Africa Genomics Centre and Consultancy (TAGCC) ltd

Kenya

TAGCC is an African company offering services in next generation sequence data analysis and consultancy in genomics. We have implemented a wide range of pipelines to analyse NGS data from various platforms including Illumina and 454. We support design and implementation of genomics and NGS based projects.

Years in service: 5

Other services offered by The Africa Genomics Centre and Consultancy (TAGCC) ltd:

Service Description Price
Base Calling Demultiplex data and convert BCL or SFF files to FASTQ files. (Time is dependent on file size) $120.00 USD (per hour)
Differential Gene Expression Analysis We Identify differentially expressed and significant genes from RNA-seq data. Our workflow includes QC clean up, removal of ribosomal RNA contamination followed by denovo or reference based mapping. RPKM/FPKM-based quantitation. $80.00 USD (per sample)
Metagenomic Analysis Generating publication ready Phylogenetic trees, Alpha and beta-diversity, rarefactions, rank abundance plots, relative abundance bar plots, with integration of meta-data, etc. Inquire
Read Filtering and Cleaning QC analysis, trimming and low quality reads removal. Both Raw and QC trimmed Fastq files will be made available. $24.00 USD (per sample)
SNP / Indel Calling Identify and qualify SNPs and Indels. $110.00 USD (per sample)
SNP / Indel Mapping Map SNPs and Indels. $110.00 USD (per sample)
Transcriptome Mapping Map mRNAs to either the reference or the assembled genome. $110.00 USD (per sample)
Genome Mapping Alignment of NGS data to reference genome and generate mapping statistics $60.00 USD (per sample)
Other Services Admixture modelling and SNP phylogenetics. Use genetic data to infer the structure and evolutionary history of populations (Time is dependent on VCF/PED file size) $225.00 USD (per hour)
Exome Analysis We analyse full exomes from raw sequence data through the process of cleaning, alignment, variant calling to analysis ready vcf file with variants effects summary. $125.00 USD (per sample)

Strand Life Sciences

India

Strand Life Sciences is a technology innovation company that has pioneered the practice of scientific intelligence in health sciences. Strand was established in 2000, with a founding theme “Algorithms for Life”. The company is an academic-spin of in India, founded by four Computer Scientists - Dr. Vijay Chandru, Dr. Ramesh Hariharan, Dr.V. Vinay, and Dr. Swamy Manohar. Since then, we have established a strong portfolio of products for biological systems research and for diagnosis and treatment of diseases. Over 2000 scientific laboratories and 100 hospitals across the world are our clients. Now, we have entered a new era guiding medical decisions using molecular insights with a new theme ‘New Generation Healthcare’.

Strand NGS-Formerly Avadis® NGS is Strand’s flagship product for analysis, management and visualization of next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, ChIP-Seq, MeDIP-Seq and Methyl-Seq experiments. We provide bioinformatics services using Strand NGS and price is dependent on man hours, number of samples and other factors. Please consult us for more details sales@strandngs.com

Years in service: 9

Other services offered by Strand Life Sciences:

Service Description Price
ChIP-Seq Analysis Inquire $500.00 USD (per sample)
Differential Gene Expression Analysis $500.00 USD (per sample)
Exome Analysis $500.00 USD (per sample)
Methylation Analysis $500.00 USD (per sample)
SNP/SV/CNV Discovery $500.00 USD (per sample)
SNP / Indel Calling $500.00 USD (per sample)
SNP / Indel Mapping $500.00 USD (per sample)

Girihlet Inc.

NGS provider United States of America

We specialize in esoteric parts of the genome offering services (sample prep, sequencing and analyses) in areas such as 1) mitochondrial DNA sequencing, 2) TCR repertoire sequencing and 3) small RNA sequencing.

We also perform routine services such as 4) mRNA-seq and 5) whole-exome sequencing. We have prepared samples from mouse, human, drosophila, as well as organisms such as zebrafish and Bats. We have developed novel, custom analytical pipelines for data analysis from each species.

Years in service: 5

Other services offered by Girihlet Inc.:

Service Description Price
Small RNA Mapping mapping and differential expression assessment with annotation for one pairwise comparison. $225.00 USD (per sample)
SNP / Indel Calling novel custom made pipelines (published) to call SNPs and INDEL effectively. $225.00 USD (per sample)
Whole Genome de novo Assembly $350.00 USD (per sample)
Differential Gene Expression Analysis 1. Gene-level expression estimation (NCBI RefSeq gene set) with annotation for each sample. 2. Transcript-level expression estimation (NCBI RefSeq transcript set) with annotation for each sample. 3. Gene-level differential expression assessment with annotation for one pairwise comparison. 4. Transcript-level differential expression assessment with annotation for one pairwise comparison. 5. ... $225.00 USD (per sample)

Beckman Coulter Genomics

NGS provider United States of America

Beckman Coulter Genomics offers next generation sequencing services designed to meet the evolving sequencing needs of academic, biotechnology and pharmaceutical researchers worldwide. A comprehensive range of next generation sequencing services is available utilizing platforms from Illumina and Roche.

End to end solutions are offered allowing tailoring of projects to your specific needs. A wide variety of bioinformatics packages are available and results consultation is provided to ensure you understand the data returned to you. For the quickest service we accept pre-made libraries for sequencing only projects.

• Expert scientists consult on project design to ensure appropriate experimental approach • Beckman Coulter instrumentation utilized for fully automated library construction and target enrichment with enhanced reproducibility and reliability • Bioinformatics scientists oversee all data analysis to ensure quality
• Videoconference provided for report review and results discussion

Trusted Partner • Over 20 years sequencing experience • 1,500+ customer publications • 200+ successful audits • Experienced staff from well-known institutes of academic and commercial excellence • Contributed sequencing data to • >10 genome projects including mouse, cat, dog and salmon • >100 Microbial and Fungal genomes

Years in service: 14

Other services offered by Beckman Coulter Genomics:

Service Description Price
Read Filtering and Cleaning Inquire
Differential Gene Expression Analysis $150.00 USD (per sample)
Small RNA Annotation $150.00 USD (per sample)
Targeted Capture Analysis $250.00 USD (per sample)
Variant Annotation $250.00 USD (per sample)
Exome Analysis $250.00 USD (per sample)
SNP / Indel Calling $250.00 USD (per sample)
Metagenomic Analysis Assembly including demultiplexing and standard run report Inquire

SciBerg

Germany

We offer computational analyses of Next-Generation Sequencing data (Illumina and Ion Torrent platforms), including RNA-seq, small RNA-seq, DNA-seq, Bisulfite-seq and ChIP-seq. Our bioinformatics support can be fully customized for your research needs, the scope and objectives of the study. We apply only up-to-data well-proven software and pipelines working under Unix/Linux environment. Optionally, our experts can help to interpret the obtained results from the scientific point of view, provided some of them are working in a close research field.

Other services offered by SciBerg:

Service Description Price
Differential Gene Expression Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Exome Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
ChIP-Seq Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
SNP/SV/CNV Discovery Inquire
Genome Annotation Inquire
Small RNA Annotation Inquire
Methylation Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire

HybridStat Predictive Analytics

Greece

HybridStat is a company bringing together a team of highly qualified and motivated scientists and developers, whose expertise spans a variety of statistics and computer science domains. Main HybridStat’s services are centered on bioinformatics, biostatistics and analytics of high-throughput data derived from modern biological technologies such as Next Generation Sequencing (NGS), DNA microarrays and Mass Spectrometry. In addition, HybridStat offers customized software solutions regarding the above.

Regarding NGS, HybridStat offers a variety of one-stop shop data analysis and analytics services, spanning from genome alignments and preprocessing of raw short read fragments, up to analytical and specialized reports and figures describing the results of various NGS protocols including RNA-Seq (quality control, differential expression and splicing analysis, biochemical pathway enrichments etc.), ChIP-Seq (data normalization and peak calling, gene-binding site associations, methylation profiles, motif finding etc.), Whole Exome and Whole Genome Sequencing (data preprocessing, variant calling, filtering, annotation and interpretation, etc.) and Single Cell Sequencing data analysis, using both open source and optimized proprietary pipelines.

HybridStat, can also offer complete support to your organization through its advanced Whole Exome Sequencing analytics platform Clingon (www.clingon-mds.com). Clingon is a complete, integrated one-stop clinical genomics and medical decision support platform which performs data analysis from raw data up to the generation of clinical reports. It uniquely integrates and curates a handful of resources regarding gene-disease and gene product-drug associations as well as curated variant annotation data towards more timely and accurate results and the optimal design of personalized treatment plans.

Years in service: 5

Other services offered by HybridStat Predictive Analytics:

Service Description Price
Differential Gene Expression Analysis A fully descriptive and interactive report is provided. $300.00 USD (flat price)
Comparative Genome Analysis $60.00 USD (per hour)
Custom scripting and special projects $70.00 USD (per hour)
Other Services $70.00 USD (per hour)
Read Filtering and Cleaning $20.00 USD (per sample)
Read Filtering and Cleaning $25.00 USD (per sample)
Read Filtering and Cleaning $30.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $200.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $150.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $170.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $85.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $70.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $100.00 USD (per sample)
SNP / Indel Mapping $40.00 USD (per sample)
SNP / Indel Mapping $25.00 USD (per sample)
SNP / Indel Mapping $30.00 USD (per sample)
Genome Mapping $25.00 USD (per sample)
Genome Mapping $20.00 USD (per sample)
Genome Mapping $30.00 USD (per sample)
SNP / Indel Calling $50.00 USD (per sample)
SNP / Indel Calling $45.00 USD (per sample)
SNP / Indel Calling $40.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $60.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $50.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $40.00 USD (per sample)
Whole Genome de novo Assembly $1000.00 USD (flat price)

ideas4biology Ltd.

Poland

DATA ANALYSIS Routine NGS data analysis in the area of genomics and transcriptomics, such as: - Gene expression and differential expression analysis - De novo and ab initio transcriptome assembly - Small RNA analysis - Genome variant calling and annotation

Customized tasks, including: - Identification of long noncoding RNAs - Identification of ta-siRNAs - Isomir and miRNA editing analysis - Annotation of non-model organisms - Building transcriptome-wide maps of RNA-RNA interactions

WORKSHOPS We offer workshops in a broad spectrum of bioinformatics applications, including: - RNA-Seq data analysis (4 days) - NGS in medical research (4 days)

EXPERIENCE We’ve been in the market since 2013 and came into collaboration with hundreds of customers. We’ve been working on model and non-model organisms, including viruses, bacteria, fungi, plants, animals, and human. We are part of research consortium aiming at development of personalized medicine services for diagnosis and treatment of lung cancers. We are also actively conducting research projects in different areas of genomics and transcriptomics, which gives us expertise in standard and up-to-date bioinformatics solutions.

INFRASTRUCTURE We have access to dedicated file storage and computational servers, with virtually unlimited (on demand) capacity.

Years in service: 6

Other services offered by ideas4biology Ltd.:

Service Description Price
Differential Gene Expression Analysis This includes: - quality filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - read mapping - expression estimation - differential expression analysis - a report, result data files and diagnostic plots Differential expression analysis itself, with expression estimations from customer: $30. $185.00 USD (per sample)
Transcriptome Mapping This includes: - quality check and filtering - adapter trimming - optional: discarding rRNA-mapping reads and other contaminants - read mapping (default or customized settings) - read mapping report and result files $100.00 USD (per sample)
Other Services Identification of long noncoding RNAs in animals and plants. This includes: - assessment of protein-coding potential with at least two independent methods - sequence length filtering - discarding of known, coding transcripts - discarding known noncoding RNAs other than lncRNAs - optionally: genomic context-driven filters - other filtering steps, depending on data availability, such as tr... $50.00 USD (per hour)
Read Filtering and Cleaning This includes: - Quality report - Quality filtering - Adapter trimming - Optionally: discarding rRNA-mapping reads or other contaminants $46.00 USD (per sample)
Small RNA Mapping This includes: - quality check and filtering - adapter trimming - read mapping to custom sequences (genome, transcriptome) - read mapping quality assessment - read mapping report This may be followed by miRNA identification or similar tasks, priced separately. $130.00 USD (per sample)
Genome Mapping This includes: - quality check and filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - read mapping with varied tools and settings - accomodated to customer's needs - quality report $85.00 USD (per sample)
SNP / Indel Calling This includes: - quality check and filtering - adapter trimming - read mapping and further processing of mapping results - SNP / Indel calling Both somatic and germline variants may be called. There is possibility to call structural variants as well, priced separately. $165.00 USD (per sample)
Small RNA Annotation This includes: - quality check and filtering - adapter trimming - read mapping to databases of noncoding RNAs, such as miRBase, DASHR or RFAM - annotation report $150.00 USD (per sample)
Methylation Analysis This includes: - quality check and filtering - adapter trimming - read mapping - calling methylated and unmethylated cytosines - differential methylation analysis: finding differentially methylated bases and regions $250.00 USD (per sample)
Transcriptome de novo Assembly This includes: - quality check and filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - transcriptome de novo assembly - a quality report and a transcriptome in FASTA format For further annotation of the transcriptome, please see our offer for "Transcriptome annotation". $250.00 USD (per sample)
Transcriptome Annotation This includes: - BLAST searches against databases of proteins and noncoding RNAs, including miRBase, RFAM, UniProt (Swiss-Prot) - hmmscan search against PFAM protein domains - assignment of GO terms to genes - assignment of KEGG pathways to genes - a report and annotation files with per gene details $125.00 USD (per sample)
Variant Annotation This includes: - prediction of possible consequences associated with predicted variants, such as affecting splicing of protein coding capacity - comparison with known variants from public databases - a report and result files $150.00 USD (per sample)

Omega Bioservices

NGS provider United States of America

Our facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.

Years in service: 7

Other services offered by Omega Bioservices:

Service Description Price
Differential Gene Expression Analysis Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. $56.00 USD (per sample)
Differential Gene Expression Analysis Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. $110.00 USD (per sample)
Transcriptome Mapping Map mRNAs to either the reference or the assembled genome. $332.00 USD (per sample)
Custom scripting and special projects We are open to your custom analysis projects. Set up a call with our Project Scientist team today to discuss your needs and obtain a quote. $500.00 USD (per sample)
Read Filtering and Cleaning Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. $110.00 USD (per sample)
Exome Analysis Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. $332.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. $332.00 USD (per sample)
Small RNA Mapping Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $221.00 USD (per sample)
SNP / Indel Mapping Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Mapping Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. $110.00 USD (per sample)
Metagenomic Analysis Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. $551.00 USD (per sample)
SNP / Indel Calling Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
SNP/SV/CNV Discovery Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Targeted Capture Analysis Variant call, gene annotation. Provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Annotation Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. $221.00 USD (per sample)
Small RNA Annotation Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $332.00 USD (per sample)
Methylation Analysis The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. $553.00 USD (per sample)
Transcriptome de novo Assembly Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. $553.00 USD (per sample)
Transcriptome Annotation Annotate or predict functions of transcribed genes using well know gene ontology tools. $332.00 USD (per sample)
Variant Annotation Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. $332.00 USD (per sample)
Whole Genome de novo Assembly Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. $3315.00 USD (per sample)
Base Calling Demultiplex data and convert BCL files to FASTQ files $110.00 USD (per sample)

Applied Biological Materials Inc.

NGS provider Canada

Committed to making newer technologies attainable to modern researchers, abm offers a wide range of sequencing services on the advanced Illumina® sequencing platforms at accessible prices and rapid turnaround times. abm's premium NGS services will not only save valuable time and money, but also provide the most reliable and comprehensive solution for the project's needs.

Advantages of using our NGS services: -dedicated NGS specialists to help with experimental design and data analysis -customizable bioinformatics analysis to suit your project needs -strict quality control at multiple steps in library preparation and sequencing -RNA-seq, miRNA-seq, WGS, metagenomics, epigenetics, Amplicon-Seq and more!

What types of bioinformatics analysis will be done? If the reference genome is available (i.e. human or mouse), read mapping and alignment to the reference genome is included in the service. -Data is available in industry standard formats: FASTQ (default), SFF or BAM. Other formats available upon request (additional fees may apply). -RNA-seq includes: Read mapping and gene expression level estimation

Our data report files are provided in formats that can be viewed with any standard text viewers.

Years in service: 6

Other services offered by Applied Biological Materials Inc.:

Service Description Price
Differential Gene Expression Analysis Service includes: 1) Principal component analysis; 2) Differential gene expression analysis; 3) Gene expression clustering; 4) Full analysis report $222.00 USD (per sample)
Exome Analysis Service includes: 1) Read mapping; 2) deduplication, local realignment and base recalibration; 3) Variation calling; 4) Variation annotation (dbSNP, COSMIC, ClinVar, 1000 Genome); 5) Full analysis report $95.00 USD (per sample)
Metagenomic Analysis Service includes: 1) Contig assembly; 2) OTU clustering and classification; 3) Alpha/beta diversity analysis; 4) Full analysis report; $35.00 USD (per sample)
SNP / Indel Calling Service available for WGS and WES to include: 1) Read mapping; 2) De-duplication, base quality recalibration, and local realignment; 3) SNP and Indel calling $225.00 USD (per sample)
Genome Annotation Service includes: 1) Gene prediction; 2) Functional annotation from KEGG, GO, NCBI $333.00 USD (per sample)
Whole Genome de novo Assembly Service for De novo assembly of genome size < 10Mb. $350.00 USD (per sample)
Microbiome Analysis Service includes: 1) Contig assembly; 2) OTU clustering and classification; 3) Alpha/beta diversity analysis; 4) Full analysis report; $35.00 USD (per sample)

Zymo Research

NGS provider United States of America

Zymo Research makes genome-wide epigenetic analyses available to every researcher with its comprehensive repertoire of services. All Next-Gen epigenetic sequencing services feature state-of-the-art sample prep technologies and workflows, cutting-edge bioinformatics, and are offered at competitive pricing. With our services, you don't have to be a bioinformatics guru; instead, our bioinformatics specialists will send you the data as a comprehensive report that is publication-ready and can be customized to fit your needs. Since we develop most of the technologies used for our services, our scientists and bioinformatics specialists are always available to answer your questions and assist you every step of the way.

Our Methyl-MiniSeq™ platform is based on an expanded reduced representation bisulfite sequencing (RRBS) protocol that allows genome-wide profiling of 5-methylcytosine (5-mC). Additionally, we can also work on a wide range of sample types including any species with a reference genome, low-input (>10 ng), and FFPE samples.

Our Reduced Representation Hydroxymethylation Profiling (RRHP) service is for genome-wide profiling of 5-hydroxymethylcytosine (5-hmC) in DNA at single-nucleotide resolution, and is the only such service available. RRHP also allows strand-specific determination of the location of the 5-hmC modification, as well as quantification of 5-hmC levels. Data from RRHP is easily integrated with DNA methylation data from Methyl-MiniSeq™, allowing for direct comparison of DNA methylation and hydroxymethylation in the same sample.

Years in service: 8

Other services offered by Zymo Research:

Service Description Price
SNP / Indel Calling Inquire
Genome Annotation Inquire
Methylation Analysis Basic bioinformatic analysis is provided and includes raw data alignment, variant calling (differential methylation and/or hydroxymethylation and SNP detection), and gene/locus annotation. Additional, complete, and customizable bioinformatic analysis is also available. Inquire

Minnesota Informatics

United States of America

Minnesota Informatics specializes in the analysis of genomic and expression data for reference and non-reference species. We are experienced in the QC, mapping/assembly, quantification and evaluation of NGS data for RNA-Seq, SNP and Single Cell sequencing projects. We have worked with human and model mammal organisms as well as plant and bacterial genomes.

We distill the large NGS datasets down to manageble tables and graphics of significant, differentially expressed or variant genes/loci.

Years in service: 9

Other services offered by Minnesota Informatics:

Service Description Price
SNP / Indel Calling Identify and qualify SNPs based on transcriptome or regions of interest. Pricing negotiable by project or by the sample. Inquire
Differential Gene Expression Analysis Identify significant genes for RNA-seq or expression data. May be included with mapping projects and price will vary with project size. Inquire
Whole Genome de novo Assembly Bid will vary with type and size of genome. Inquire
Read Filtering and Cleaning QC analysis, trimming and low quality masking/removal. Inquire
Transcriptome Annotation Inquire
Transcriptome Mapping Inquire
Transcriptome de novo Assembly Inquire
ChIP-Seq Analysis Inquire
SNP/SV/CNV Discovery Inquire

Bioinformatics Unit, Panacea Biosciences

NGS provider India

Other services offered by Bioinformatics Unit, Panacea Biosciences:

Service Description Price
Custom scripting and special projects Based on project requirements. $15.00 USD (per hour)
Read Filtering and Cleaning $40.00 USD (per sample)
Exome Analysis End to End Exome-Seq Data Analysis $75.00 USD (per sample)
ChIP-Seq Analysis we present step-by-step guidelines for the computational analysis of ChIP-seq data. We address all the major steps in the analysis of ChIP-seq data: sequencing depth selection, quality checking, mapping, data normalization, assessment of reproducibility, peak calling, differential binding analysis, controlling the false discovery rate, peak annotation, visualization, and motif analysis. $80.00 USD (per sample)
Genome Mapping Available only for Human, Mouse and available sequenced geneomes $75.00 USD (per sample)
SNP/SV/CNV Discovery End to End variant analysis $70.00 USD (per sample)
Small RNA Annotation Available only for Human, Mouse and available sequenced geneomes $60.00 USD (per sample)
Base Calling Base calling is the process of assigning bases (nucleobases) to chromatogram peaks. One computer program for accomplishing this job is Phred base-calling, which is a widely used basecalling software program by both academic and commercial DNA sequencing laboratories because of its high base calling accuracy. $50.00 USD (per sample)

TheragenEtex

NGS provider South Korea

TheragenEtex is specialized genomics company developing innovative diagnosis tools and new drugs using the genomics and bioinformatics technologies. TheragenEtex's world class analysis technologies are proven by number of high impact journal publications.

We are providing genome-based customized research service such as Genome, Transcriptome and Epigenome. In addition, we have personal genome service which is screening disease susceptibility, physical traits, drug sensitivity and so on.

Based on these technologies and experiences, we are putting endless efforts to revolutionize personalized medicine and to become a global leader in human welfare and healthcare.

Years in service: 11

Other services offered by TheragenEtex:

Service Description Price
Variant Annotation Inquire
SNP / Indel Calling Inquire

Leucine Rich Bio

India

Other services offered by Leucine Rich Bio:

Service Description Price
Read Filtering and Cleaning Leucine Rich Bio offers Read filtering, cleaning and quality control analysis. We also offer statistical and heuristic analysis. Literature mining services are also provided. As we are Bangalore (India) based company, we offer very competitive pricing. $75.00 USD (per sample)
Transcriptome Annotation Inquire
Small RNA Annotation Inquire
Transcriptome Mapping Inquire
Comparative Genome Analysis Inquire
Variant Annotation Inquire
Differential Gene Expression Analysis Inquire
Targeted Capture Analysis Inquire
SNP / Indel Calling Inquire
SNP / Indel Mapping Inquire
Transcriptome de novo Assembly Inquire
Exome Analysis Inquire
Whole Genome de novo Assembly Inquire
SNP/SV/CNV Discovery Inquire
Custom scripting and special projects Inquire
Genome Annotation Inquire
Genome Mapping Inquire
ChIP-Seq Analysis Inquire
Metagenomic Analysis Inquire
Microbiome Analysis Inquire

DREAMgenics

NGS provider Spain

We offer bioinformatics analysis services for human and other organisms genomic and transcriptomic NGS data.

  • Our team of experts offers a completely personalized consulting service, including scientific and technical solutions to your needs. We help you to obtain the best results from your analysis.

  • Our collaboration with the most reliable sequencing providers allow us to select the most suitable platform for your project. We also can assist you in all steps prior to sequencing, such us sample and library preparation and quality controls.

  • DREAMgenics bioinformatics framework has been designed to readily adapt to your needs. Capable of integrating your own algorithms, pipelines and databases to complement the data analysis and interpretation.

  • Our analyses identify high quality genomic variants through excellent sensitivity and specificity standards, extracting meaningful biological information and reducing validation process costs. The results will be delivered through a detailed report.

  • We offer the possibility of advanced visualization and interactive review of results through our exclusive DG Reports web application. (Filtering and priorization of variants, Pre-classification of variants, Graphic interface (genomic browser), Statistics and quality controls, Exportable information, Automated generation of reports).

All our procedures meet with the requirements set by the new General Data Protection Regulation.

Years in service: 8

Other services offered by DREAMgenics:

Service Description Price
ChIP-Seq Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Exome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Base Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Comparative Genome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Custom scripting and special projects https://www.dreamgenics.com/en/bioinformatics-services/ https://www.dreamgenics.com/en/research-projects/ Inquire
Other Services - Research projects https://www.dreamgenics.com/en/research-projects/ - Bioinformatics software design and developments https://www.dreamgenics.com/en/hd-genome-one-en/ - Gene and/or regions of interest panels, ATAC Seq, Family studies, trio analysis.. https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Differential Gene Expression Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Metagenomic Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Methylation Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Microbiome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Read Filtering and Cleaning https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP/SV/CNV Discovery https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Targeted Capture Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Variant Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Whole Genome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire

genexa Ltd

Switzerland

genexa is a genomic data analysis provider located in Switzerland. Our bioinformatics services are centered around de novo assembly of genomes and metagenomes. We focus on processing, analysis, and interpretation of your genomics data. For all our fields of expertise, we offer to perform the entire analysis workflow from raw data to documentation, but also consulting and troubleshooting if required. genexa also provides resources to run computationally demanding tasks for specific jobs if you have an existing analysis workflow, but lack the computational resources to run it on large amounts of data. For further information check: genexa.ch

Years in service: 5

Other services offered by genexa Ltd:

Service Description Price
Comparative Genome Analysis Inquire
Microbiome Analysis Inquire
Variant Annotation Inquire
Genome Annotation Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Custom scripting and special projects Inquire
Whole Genome de novo Assembly Inquire
Other Services We offer bioinformatics services using long-read sequencing (PacBio & Oxford Nanopore Technologies). We have several years of experience using third-gen. technologies, mainly applying these technologies for de novo assembly of individual genomes and metagenomes. We also offer transcriptomic analyses using long-read technologies. If you want to start using PacBio or Oxford Nanopore Technologie... Inquire
Transcriptome Annotation Inquire
Base Calling Inquire
Differential Gene Expression Analysis Inquire

Cofactor Genomics

NGS provider United States of America

Cofactor is focused on 3 main applications: RNA-sequencing, de novo assembly, and SNP/INDEL detection via resequencing. Over the last year, we have put significant R&D into our RNA-seq pipeline, and are now pleased to offer industry-leading protocols such as molecular spike-in controls, unprecedented QA/QC checks, ribosomal content screening, saturation analysis, and our ActiveSite Expression Viewer. These same protocols are also applied to our miRNA sequencing pipeline.

Other applications that fit well within our pipeline are: amplicon sequencing, custom capture and sequencing, 16S sequencing/microbiome sequencing, and highly custom projects.

Our scientists are happy to work with traditional model organisms, but we are experts in the more obscure. We've worked with nucleic acids from the complex field isolates, many plants including grapes, a variety of obscure animals including the Tardigrade (Water bear), and bacteria from multiple sources (micro biome, marine, biofuels, etc) to name a few.

While we are set-up to act as consultants, and support researchers throughout a full-service sequencing project, we are also happy to address the needs of more experienced researchers. Our expertise in library preparation or analysis may also be procured separate from the full-service offerings. And, those researchers who work with us in any capacity will have access to our team of scientists for support.

We have worked on small scale (1 sample) projects, all the way up through the larger, high throughput projects developed by big pharma. Every customer receives the same level of attentive, knowledgable customer service.

Years in service: 11

Other services offered by Cofactor Genomics:

Service Description Price