Targeted Capture Analysis
Targeted resequencing involves the isolation of genomic sequences of interest using a ‘targeted’ or ‘capture based’ library preparation approach. Pipelines designed for targeted capture, align sequences to a reference genome, identify SNPs (single nucleotide polymorphisms) and INDELs (insertions and deletions). Targeted analysis can be broken down in the following steps:
1) Base calling and image analysis
2) Gapped alignment
3) Sorting, indexing and PCR duplicate removal
4) SNP calling
5) Annotation
Providers offering Targeted Capture Analysis (found 17)
Omega Bioservices
NGS provider United States of AmericaOur facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.
Years in service: 12Other services offered by Omega Bioservices:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. | $56.00 USD (per sample) |
| Differential Gene Expression Analysis | Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. | $110.00 USD (per sample) |
| Transcriptome Mapping | Map mRNAs to either the reference or the assembled genome. | $332.00 USD (per sample) |
| Custom scripting and special projects | We provide study specific bioinformatics analysis (known as tertiary analysis). such as (not limited to) 1) process secondary sequencing data analysis for a variety of platforms such as Nanostring, Nanopore, single cell expression. 2) integrative analysis across sequencing platforms (such as DNA-seq, RNA-seq, Chip-seq) 3) integrate meta/clinical information, perform association study and build p… | $60.00 USD (per hour) |
| Read Filtering and Cleaning | Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. | $110.00 USD (per sample) |
| Exome Analysis | Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. | $332.00 USD (per sample) |
| ChIP-Seq Analysis | ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. | $332.00 USD (per sample) |
| Small RNA Mapping | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $221.00 USD (per sample) |
| SNP / Indel Mapping | Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
| Genome Mapping | Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. | $110.00 USD (per sample) |
| Metagenomic Analysis | Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. | $551.00 USD (per sample) |
| SNP / Indel Calling | Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
| SNP/SV/CNV Discovery | Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
| Targeted Capture Analysis | Variant call, gene annotation. Provided free of charge with sequencing service. | $332.00 USD (per sample) |
| Genome Annotation | Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. | $221.00 USD (per sample) |
| Small RNA Annotation | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $332.00 USD (per sample) |
| Methylation Analysis | The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. | $553.00 USD (per sample) |
| Transcriptome de novo Assembly | Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. | $553.00 USD (per sample) |
| Transcriptome Annotation | Annotate or predict functions of transcribed genes using well know gene ontology tools. | $332.00 USD (per sample) |
| Variant Annotation | Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. | $332.00 USD (per sample) |
| Whole Genome de novo Assembly | Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. | $3315.00 USD (per sample) |
| Base Calling | Demultiplex data and convert BCL files to FASTQ files | $110.00 USD (per sample) |
One Health Innovation Lab
NGS provider United States of AmericaAt the forefront of scientific advancement, our sequencing and biorepository facility is part of the One Health Shared Services at Innovation Foundation dedicated to enhancing the health and well-being of humans, animals, and ecosystems.
Our mission: To advance health across boundaries.
Sequencing platforms: NextSeq2000: Versatile Illumina platform for flexibility and speed. MiniSeq: Compact and cost-effective, suitable for targeted sequencing and small-scale applications.
We offer cutting-edge genomic research services & Bioinformatics support. Bioinformatics Support: Our bioinformatics experts collaborate closely with you.
Why Choose Us? Accuracy: Our cutting-edge technology ensures reliable results. Fast Turnaround: Get your data quickly without compromising quality. Expert Support: Our scientists are here to assist you. Custom Solutions: Tailored services to meet your specific research goals. End-to-end solutions: From experimental design to data analysis, we guide you every step of the way.
Contact Us at OHIL@okstate.edu to discuss your sequencing needs or possible collaborations with the One Health Innovation Lab.
Other services offered by One Health Innovation Lab:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | Differential Gene Expression Analysis from RNAseq data. Input - gene counts from RNAseq (output from Transcriptome Mapping) Deliverables - PCA plot showing sample clustering, MA plot (log2 fold changes in gene expression between groups with significant calls highlighted), list of Differentially Expressed Genes (DEGs), GSEA or GO Analysis on DEGs Note: Price advertised is per biological compar… | $50.00 USD (per sample) |
| Transcriptome Mapping | Alignment of RNAseq data to the reference genome, removal of PCR duplicates, report of alignment statistics with gene counts. Input - .fastq file Deliverables - fastqc report, bam file (sorted, PCR duplicates removed), alignment stats, gene counts | $50.00 USD (per sample) |
| Custom scripting and special projects | Custom scripting or analysis, data visualization assistance, and additional services are available starting around $20 per sample. Please reach out to us to get a more accurate quote - we'd love to help you with your project! | $20.00 USD (per sample) |
| Exome Analysis | Analysis of targeted exome sequencing. Input - .fastq file Deliverables - fastqc report, bam file (sorted, PCR duplicates removed), alignment stats, exome panel coverage stats | $50.00 USD (per sample) |
| Genome Mapping | FOR WHOLE GENOME SEQUENCING ALIGNMENT ONLY. Includes alignment of .fastq file to reference genome, removal of PCR duplicates, and report of alignment quality. Input - .fastq file Deliverables - fastqc report, bam file (sorted, PCR duplicates removed), alignment stats | $150.00 USD (per sample) |
| Genome Mapping | FOR TARGETED AMPLICON SEQUENCING ALIGNMENT ONLY. Includes alignment of .fastq file to reference genome, removal of PCR duplicates, and report of alignment quality. Input - .fastq file Deliverables - fastqc report, bam file (sorted, PCR duplicates removed), alignment stats | $50.00 USD (per sample) |
| SNP/SV/CNV Discovery | Variant calling analysis on aligned genomic data. Input - .bam file (alignment) Deliverables - .vcf file of variants | $20.00 USD (per sample) |
| Targeted Capture Analysis | For data types such as ChIPseq, ATACseq, CUT and RUN, etc, in which amplicons are targeted for sequencing. Includes alignment to the reference genome, removal of PCR duplicates, a report of alignment quality, and calling of "peaks"/"binding sites". Input - .fastq file Deliverables - fastqc report, bam file (sorted, PCR duplicates removed), alignment stats, binding site/"peak" calls (w/ and w/o … | $50.00 USD (per sample) |
| Base Calling | Base calling from .bcl file. Input - .bcl file Deliverables - fastq file and fastqc report | $20.00 USD (per sample) |
Geno-plex Bioinformatics Services
SwitzerlandWe offer tailored bioinformatics services (mainly NGS data analysis) to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software.
We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently.
We replicate recommended analysis pipelines (best practice) or develop novel ones but we always emphasize biological interpretation of your data.
Years in service: 11Other services offered by Geno-plex Bioinformatics Services:
| Service | Description | Price |
|---|---|---|
| Transcriptome Mapping | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
| Custom scripting and special projects | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | Inquire |
| Other Services | Primer design for efficient multiplex PCR reactions | Inquire |
| Exome Analysis | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
| Genome Mapping | We replicate recommended analysis pipelines (best practice) using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently. | Inquire |
| SNP / Indel Calling | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
| SNP/SV/CNV Discovery | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
| Targeted Capture Analysis | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
| Variant Annotation | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
Parseq Lab
CzechiaParseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment
We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis
Collaborations: genomic research labs, sequencing facilities, academic and research institutions.
Years in service: 13Other services offered by Parseq Lab:
| Service | Description | Price |
|---|
Next Generation Intelligence
NGS provider ItalyNGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.
Expertise:
Our expertise is in the epigenetics field in mouse and human organisms.
Infrastructure:
we will provide FTP access to our storage server to upload raw data and download analyzed data.
Other services offered by Next Generation Intelligence:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | Inquire | |
| Transcriptome Mapping | Inquire | |
| Custom scripting and special projects | Inquire | |
| Other Services | Inquire | |
| Read Filtering and Cleaning | Inquire | |
| Exome Analysis | Inquire | |
| ChIP-Seq Analysis | Inquire | |
| Small RNA Mapping | Inquire | |
| SNP / Indel Mapping | Inquire | |
| Genome Mapping | Inquire | |
| SNP / Indel Calling | Inquire | |
| SNP/SV/CNV Discovery | Inquire | |
| Targeted Capture Analysis | Inquire | |
| Genome Annotation | Inquire | |
| Small RNA Annotation | Inquire | |
| Methylation Analysis | Inquire | |
| Transcriptome de novo Assembly | Inquire | |
| Transcriptome Annotation | Inquire | |
| Variant Annotation | Inquire | |
| Base Calling | Inquire |
AC-Gen Reading Life S.L.
NGS provider SpainAC-Gen Reading Life is a Spanish pioneer company in the application of Next-Generation Sequencing technology (NGS) for clinical use. We have the NGS Ion Torrent™ platform available in our lab, and can carry out data analysis. Ion Torrent™ technology for NGS is the fastest and cost effective technology in the market for DNA analysis.
Mission: to improve the health and quality of life of people affected by genetic diseases.
Objectives: To provide high quality genetic analysis and cost-effective to help the implementation of personalized genomic medicine, as well as foster the development of partnerships in the field of research.
Years in service: 12Other services offered by AC-Gen Reading Life S.L.:
| Service | Description | Price |
|---|---|---|
| Targeted Capture Analysis | Base calling, annottation | $300.00 USD (per sample) |
| Genome Annotation | Bacteria genome | $400.00 USD (per sample) |
| Base Calling | Torrent server and Ion reporter | $300.00 USD (per sample) |
ContigExpress, LLC
United States of AmericaContigExpress is the leading integrated genomics data service provider. We offer genomic project management, data analysis, and bio-IT consulting services. Our unique value to our clients lies in our deep understanding of both biology and informatics. From project consultation, bio-IT infrastructure implementation, to data analysis, our experienced scientists deliver not only cost-effective customized informatic solutions but also their expert insights.
Our team consists of Ph.D.-level computational biologists with extensive training and professional practice in bioinformatics and genomic research. We understand both your cutting-edge research and your informatics challenges. We enable you and your team to extract actionable information from the vast amount of genomic data in a cost-effective and timely fashion.
We at ContigExpress strive to deliver affordable expert genomic data solutions to researchers and clinicians. We place the utmost emphasis on information confidentiality, data security, and data integrity. Please schedule a complimentary project discussion with one of our expert bioinformaticians to discover how we can help you move your genomics research forward!
Years in service: 15Other services offered by ContigExpress, LLC:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | Following is a list of common analysis items for RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Gene and transcript-based quantitation, RPKM/FPKM-based quantitation, Raw hit count-based … | Inquire |
| Other Services | We are a professional bioinformatics service provider and we are happy to provide customized informatic solutions to your unique research and business needs. Please feel free to reach out to us to discuss how we can help you. | Inquire |
| Exome Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
| ChIP-Seq Analysis | Following is a list of common analysis items for ChIP-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Peaking calling with or without control samples 5) Gene assignment and peak annotation 6)… | Inquire |
| Small RNA Mapping | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
| Genome Mapping | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
| Metagenomic Analysis | Following is a list of common analysis items for Metagenomics Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Sequence assembly 4) Biodiversity analysis and binning 5) Gene predication and functional annotation 6) Gene Ontology and path… | Inquire |
| SNP/SV/CNV Discovery | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
| Targeted Capture Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
| Genome Annotation | Following is a list of common analysis items for Genome Annotation. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Gene prediction with or without RNASeq data 3) BLAST-based gene function annotation 4) Written project report with analysis methods, publication-ready graph… | Inquire |
| Small RNA Annotation | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
| Methylation Analysis | Following is a list of common analysis items for Methylation Sequencing, including MeDIP-Seq, hMeDIP-Seq, RRBS / Targeted Bisulfite-Seq, WGBS, and 5-mc RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Methylation state-sensitive mapping 4) … | Inquire |
| Transcriptome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Transcriptome assembly, scaffolding and gap closure 4) Gene annotation (molecular function, Gene Ontology and pathways) 5) SNP disc… | Inquire |
| Transcriptome Annotation | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Project consultation 2) Transcriptome annotation (molecular functions, Gene Ontology and pathway) 3) Written project report with analysis methods, publication-ready graphics, and references | Inquire |
| Whole Genome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Contig assembly 4) Scaffolding and gap closure 5) Gene/ORF prediction 6) Gene annotation and classification via database search and… | Inquire |
CD Genomics
NGS provider United States of AmericaWe specialize in the services of DNA sequencing, genotyping, DNA library construction and aptamer development. Shotgun Library Sequencing, cDNA Library Sequencing, SAGE Library Sequencing, Whole Genome Sequencing and Primer Walking Sequencing. we offer high quality Re-sequencing & SNP Discovery Services. Quite a few of our staff scientists once participated in the International HapMap Project too.
extensive experience in whole genome shotgun sequencing services. Beginning from bacterial cells or genomic DNA, we provide you with accurate genome consensus sequences. We are also experienced in genome annotation and comparative genomics research. Notably our staff scientists have finished a number of whole microbial genome sequencing projects, such as the genomes of Pseudomonas bathycetes, Bacillus thuringiensis, Thermoanaerobacter tengcongensis, Streptococcus suis, and quite a few virus genomes. In addition, our in-house Laboratory Information Management System (LIMS) as well as manual basecalling ensures the highest service quality.
CD Genomics has been offering professional DNA library construction services for over 5 years. Hundreds of various cDNA libraries (such as standard cDNA library, large insert cDNA library, normalized cDNA library and subtracted cDNA library) and genomic DNA libraries (including short-insert plasmid shotgun library, large-insert plasmid shotgun library, whole genome shotgun library, Fosmid library, Cosmid library, MiniBAC and BAC library) have been constructed in our lab
CD Genomics has been dedicated to provide a full range of services to develop high quality customized aptamers for research, diagnostic and therapeutic applications. Services offered by CD Genomics include aptamer synthesis, aptamer generation, cell aptamer selection, aptamer design and modification, negative selection and so on.
Years in service: 19Other services offered by CD Genomics:
| Service | Description | Price |
|---|---|---|
| Other Services | We provide statistical and bioinformatic data analysis services that help explain the large amounts of data commonly generated by next generation sequencing and genotyping experiments. Our bioinformatic staff consists of all PhD-level scientists trained in bioinformatics, biology and statistics. The software infrastructure for analysis is a combination of custom-built and open-source software. O… | Inquire |
| SNP / Indel Mapping | CD genomics can help you analyze genetic variation efficiently to meet diverse research needs. By utilizing Affymetrix and Illumina array platforms, we support high-throughput and multiplex processing to meet diverse research needs, delivering high-quality data at a low per-sample cost. Advantages of SNP Microarray Custom, flexible, and scalable; High call rates (> 99%) and high accuracy; Cost-… | $80.00 USD (per sample) |
| Metagenomic Analysis | Key Features and Advantages Longest average read lengths, with~50% of reads longer than 50kb, which exceeds the size of repetitive elements in the average bacterial genome. No DNA amplification. Highest consensus accuracy, low sequencing-context bias Novel bioinformatics analysis programs and pipelines Well-experienced personnel Sample Requirements: gDNA≥5 ug Sequencing Strategy: PacBio Platfo… | 120.00 |
Leucine Rich Bio
IndiaLeveraging the expanding prospects of microbiome research, Leucine Rich Bion has integrated a robust computational pipeline "MetaRich" into a user-friendlyplatform for comprehensive analyses of any microbiome data.
After rigorous testing & validation of several leading microbiome analysis pipelines, tools & databases, we have compiled “MetaRich” to analyze both 16s rDNA & shotgun metagenomes, duly supplemented by our in-house computational tools. MetaRich will assist both researchers & industry personnel who are in pursuit of discovering biological insights within complex microbial systems & will ease the arduous task of large-scale microbiome data analysis.
Years in service: 10Other services offered by Leucine Rich Bio:
| Service | Description | Price |
|---|---|---|
| Microbiome Analysis | For Individual Samples Abundance data - Raw & % Normalized Abundance Bar plots - Raw & % Normalized Pie charts - Kingdom through Phylum Alpha diversity Plots & index value table AMR Prediction Comparative Analyses Differential abundance data (across groups) Abundance Bar plots Raw & % Normalized Alpha diversity Plots & index value table Beta diversity Plots & index value table PCoA analysis & pl… | $9.00 USD (per sample) |
Beckman Coulter Genomics
NGS provider United States of AmericaBeckman Coulter Genomics offers next generation sequencing services designed to meet the evolving sequencing needs of academic, biotechnology and pharmaceutical researchers worldwide. A comprehensive range of next generation sequencing services is available utilizing platforms from Illumina and Roche.
End to end solutions are offered allowing tailoring of projects to your specific needs. A wide variety of bioinformatics packages are available and results consultation is provided to ensure you understand the data returned to you. For the quickest service we accept pre-made libraries for sequencing only projects.
• Expert scientists consult on project design to ensure appropriate experimental approach
• Beckman Coulter instrumentation utilized for fully automated library construction and target enrichment with enhanced reproducibility and reliability
• Bioinformatics scientists oversee all data analysis to ensure quality
• Videoconference provided for report review and results discussion
Trusted Partner • Over 20 years sequencing experience • 1,500+ customer publications • 200+ successful audits • Experienced staff from well-known institutes of academic and commercial excellence • Contributed sequencing data to • >10 genome projects including mouse, cat, dog and salmon • >100 Microbial and Fungal genomes
Years in service: 19Other services offered by Beckman Coulter Genomics:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | $150.00 USD (per sample) | |
| Read Filtering and Cleaning | Inquire | |
| Exome Analysis | $250.00 USD (per sample) | |
| Metagenomic Analysis | Assembly including demultiplexing and standard run report | Inquire |
| SNP / Indel Calling | $250.00 USD (per sample) | |
| Targeted Capture Analysis | $250.00 USD (per sample) | |
| Small RNA Annotation | $150.00 USD (per sample) | |
| Variant Annotation | $250.00 USD (per sample) |
NXT-Dx
NGS provider BelgiumAt NXT-Dx we can offer SE50, PE50 and PE100 sequencing on the Illumina HiSeq. On top of this we can also offer different sequencing settings on the Illumina MiSeq and shortly we will also be able to offer sequencing on the Illumina NextSeq.
We can offer sequencing of already prepared libraries but we can also offer full-scope projects whereby we receive cells, tissue, gDNA or RNA and take care of the sample preparation, library prep, sequencing and bio-informatics analysis.
We have worked with samples from all kind of species (mammalian, plant, bacterial) and all kind of cell types.
We pride ourselves in having close contact with our customers and only one single contact point. Also after the delivery of the data, we remain available to answer any questions customers might have on their data, their analysis, etc.
Years in service: 13Other services offered by NXT-Dx:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | $170.00 USD (per hour) | |
| Transcriptome Mapping | $170.00 USD (per hour) | |
| Comparative Genome Analysis | $170.00 USD (per hour) | |
| Custom scripting and special projects | $170.00 USD (per hour) | |
| Read Filtering and Cleaning | $170.00 USD (per hour) | |
| Exome Analysis | $170.00 USD (per hour) | |
| ChIP-Seq Analysis | $170.00 USD (per hour) | |
| Small RNA Mapping | $170.00 USD (per hour) | |
| Genome Mapping | $170.00 USD (per hour) | |
| Targeted Capture Analysis | $170.00 USD (per hour) | |
| Genome Annotation | $170.00 USD (per hour) | |
| Small RNA Annotation | $170.00 USD (per hour) | |
| Methylation Analysis | $170.00 USD (per hour) | |
| Transcriptome Annotation | $170.00 USD (per hour) | |
| Variant Annotation | $170.00 USD (per hour) | |
| Base Calling | $170.00 USD (per hour) |
BioInfoRx
United States of AmericaAt BioInfoRx, we help scientists obtain biological insights from complex genomic data. We provide complete NGS analytic solutions including standard analysis of raw data, integration between multiple experiments, and online database for data mining and visualizations. We use best-practice open source tools to analyze your raw NGS data, and provide meaningful annotations and downstream data mining tools to help you infer functional insights.
As demonstrated by the numerous publications using our services or web-bases tools, our biology-centric approach has proven effective to decipher molecular mechanisms from genomic data.
Years in service: 15Other services offered by BioInfoRx:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | We use a robust pipeline with flexible statistical models to identify differentially expressed genes (DEG) from raw RNA-Seq data. The list of DEG is only part of the results we delivery. We also help you assess data quality and verify your experimental design, and deliver your data in an online database where you can perform additional data mining: 1) Adjust filter criterion for DEG 2) Search f… | $99.00 USD (per sample) |
| Custom scripting and special projects | We offer a variety of custom genomic analysis services. Our team has both strong biological and computational background, and we can tackle any questions for you. -Custom genome browser -Online genomic database -Circo plots, pathway analysis -Functional annotation of newly sequences genomes -Integrative analysis of RNA-Seq, ChIP-Seq, motif discovery, etc. | $125.00 USD (per hour) |
| Exome Analysis | We use best-practice method to map reads and make variant calls. We include robust quality control metrics for exome capture performance. The variants come with rich annotation regarding effects on genes and regulatory regions. | $99.00 USD (per sample) |
| ChIP-Seq Analysis | Finally you can unleash the full potential of your ChIP-Seq data in a quick and easy way. With the biologist-friendly web interface powered by BxChIPSeq 2.0, you can focus on the biology without worrying about hardware, software, algorithms. -Peak Report (with gene annotations, and enriched genomic regions) -De novo motif discovery, and enriched known motifs -Functional enrichment of genes (G… | $99.00 USD (per sample) |
| Targeted Capture Analysis | We use best-practice method to map reads and make variant calls. We include robust quality control metrics for target capture performance. The variants come with rich annotation regarding effects on genes and regulatory regions. | $99.00 USD (per sample) |
DNA Link Inc.
NGS provider United States of AmericaDNA Link was founded in 2000. In the beginning, we offered genome analysis for Universities and Government Institutes supporting a lot of joint research projects. Later we became involved in larger research projects funded by the government and expanded our market to all research, Biotech, Pharmaceutical, foreign institutes and companies. Based on our 20 year-experiences, DNA Link provides options and services in Next generation sequencing, Genotyping, Microarray, Forensics and also personal genomics. Our expertise in research on SNP discovery has lead DNA Link to develop novel personal identification systems called AccuID. DNALink USA, Inc, is based in Los Angeles, CA
Years in service: 25Other services offered by DNA Link Inc.:
| Service | Description | Price |
|---|---|---|
| Transcriptome Mapping | 1. Basic bioinformatics analysis Sequencing Summary Alignment Summary Summarizing plots o Density plot, Box plot, GSEA, Scatter plot, Volcano plot List of genes expressed differentially between given classes List of transcripts expressed differentially between given classes Pathway analysis using DAVID 2. Advanced bioinformatics analysis (optional) Fusion gene analysi… | Inquire |
| Exome Analysis | 1. Basic bioinformatics analysis: Analysis using GATK(2.7) best practices guideline Sequencing Summary Alignment Summary Depth Coverage Plot Genotype Calling and SNP detection Germline & Somatic Variant Summary and Annotation ○ Prediction Amino acid substitution and risk score(SIFT, PolyPhen, Phylop, mutationTaster and so on) ○ Frequency estimation using 1000genome and ESP4500 2.… | Inquire |
| ChIP-Seq Analysis | 1. Basic bioinformatics analysis Sequencing Summary Alignment Summary List of peak positions identified by ChIP-seq tools Input data is transformed into applicable bam or wig format, as needed for visualization by commonly used genome browsers (e.g. IGV or UCSC Genome Browser) 2. Advanced bioinformatics analysis (optional) Medip Peak analyzer Customized Analysis(Client… | Inquire |
| Small RNA Mapping | 1. Basic bioinformatics analysis Sequencing Summary Alignment Summary Visualization plot o Density plot, Box plot, GSEA, Scatter plot, Volcano plot 2. Advanced bioinformatics analysis (optional) Target scan Analysis (limited to specific species) Pathway Analysis Customized Analysis(Client Support) | Inquire |
| Genome Mapping | 1. Basic bioinformatics analysis Analysis using GATK(2.7) best practices guideline Sequencing Summary Alignment Summary Depth Coverage Plot Genotype Calling and SNP detection Germline & Somatic Variant Summary and Annotation ○ Prediction Amino acid substitution and risk score(SIFT, PolyPhen, Phylop, mutationTaster and so on) ○ Frequency estimation using 1000genome and ESP450… | Inquire |
| Targeted Capture Analysis | Analysis using GATK(2.7) best practices guideline Sequencing Summary Alignment Summary Depth Coverage Plot Genotype Calling and SNP detection Variant Summary and Annotation ○ Prediction Amino acid substitution and risk score(SIFT, PolyPhen, Phylop, mutationTaster and so on) ○ Frequency estimation using 1000genome and ESP4500 2. Advanced bioinformatics analysis (optional)… | Inquire |
| Methylation Analysis | 1. Basic bioinformatics analysis Sequencing Summary Alignment Summary List of peak positions identified by ChIP-seq tools Input data is transformed into applicable bam or wig format, as needed for visualization by commonly used genome browsers (e.g. IGV or UCSC Genome Browser) 2. Advanced bioinformatics analysis (optional) Medip Peak analyzer Customized Analysis(Cli… | Inquire |
| Whole Genome de novo Assembly | Sequencing Summary Pre-Assemble ( Error correction ) De novo Assembly ( contig, scaffold ) Consensus Polishing Gene prediction ( need RNA-seq data for Eukaryotes ) Genome plot 2. Advanced bioinformatics analysis (optional) De novo Assembly ( contig, scaffold ) Gene Annotation ( Gene Ontology ) Customized Analysis (Client Support) | Inquire |
Dreamgenics
NGS provider SpainDreamgenics is a biotech company that offers bioinformatics analysis services for genomic, transcriptomic and metagenomic NGS data using our Genome One software. Genome One (CE-IVD certified) is an advanced tool that allows the integration of all the bioinformatics solutions required for the study, including read alignment, variant calling and annotation. Our analyses identify high-quality genomic variants through high sensitivity and specificity standards, extracting important biological information and reducing validation costs. The services that we offer are the following: WGS, WES, Gene panels, Transcriptomics (RNA-Seq) and Metagenomics. Additionally, we hand in the results using our web viewer Genome One Reports (https://www.dreamgenics.com/en/genome-one/).
The use of our bioinformatics tools allows us to offer you high-quality results in a fast and simple way. By using our analysis services, you considerably reduce costs and the investment in technological devices, informatics and qualified professionals.
Lastly, we are an ISO 9001:2015, UNE-EN ISO 13485:2018 and UNE-ISO/IEC 27001:2017 certified company which represents our commitment to provide our customers with products and services that meet the most demanding quality standards.
Years in service: 13Other services offered by Dreamgenics:
| Service | Description | Price |
|---|---|---|
| Single Cell RNA-Seq Analysis | We offer Single cell RNA-Seq bioinformatic analysis from FASTQ files including: - Sequencing and mapping quality control. - Alignment of reads against reference genome. - Quantification of gene expression at the single cell level. - Reduction of data dimensionality. - Clustering or division of cells into different groups and subgroups. - Differential gene expression analysis. - Study of the evol… | $200.00 USD (per sample) |
| Differential Gene Expression Analysis | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
| Exome Analysis | Our bioinformatics analysis includes: Quality control, Alignment, Detection of high quality variants (SNVs, translocations and CNVs), Filtering of common variants, Annotation of variants obtained with multiple databases and prediction algorithms and Comparison between samples and extraction of recurrent variants. We will deliver the results to the Genohub data bucket as well as through our platf… | $80.00 USD (per sample) |
| Transcriptome Annotation | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
Biotia, Inc
NGS providerWe provide Illumina library prep and sequencing. We also offer metagenomic analysis for full microbial profiling through our software, BIOTIA-DX and SARS-CoV-2 genetic variant analysis through our user-friendly software platform COVID-DX. Our analysis platform has been reviewed by the FDA and has FDA EAU as part of the SARS-CoV-2 NGS Assay. COVID-DX is also optimized for amplicon-based targeted sequencing of SARS-CoV-2. We specialize in infectious disease, metagenomics, microbial sequencing including bacteria, viruses, and fungi.
Years in service: 9Other services offered by Biotia, Inc:
| Service | Description | Price |
|---|---|---|
| Targeted Capture Analysis | COVID-DX: DEEP SARS-COV-2 GENETIC VARIANT INSIGHTS • Rapid characterization of OMICRON and 150 other delta-like variants. • Compatible with hybrid targeted capture and amplicon-based (e.g. ARTIC PCR-based) CRITICAL INSIGHTS Truly comprehensive variant profiling • Lineages • Clade • Coverage • Phylogenetic analysis Static pipeline, dynamic database • Up-to-date variant curation in accordance w… | $8.00 USD (per sample) |
| Variant Annotation | COVID-DX: DEEP SARS-COV-2 GENETIC VARIANT INSIGHTS • Rapid characterization of OMICRON and 150 other delta-like variants. • Compatible with hybrid targeted capture and amplicon-based (e.g. ARTIC PCR-based) CRITICAL INSIGHTS Truly comprehensive variant profiling • Lineages • Clade • Coverage • Phylogenetic analysis Static pipeline, dynamic database • Up-to-date variant curation in accordance w… | $12.80 USD (per sample) |
Diagnomics
United States of AmericaDiagnomics Inc. is a biotech company in the heart of the Biotech Beach, in San Diego California. The company focuses on products and services for personalized medicine based on personal genome and cutting edge bioinformatics analysis. Diagnomics provides complete personal genome sequencing and bioinformatics solutions to biomedical researchers, physicians and individuals seeking to understand the genetic influence of personal health and disease.
Expertise:
We aim to provide the highest possible quality genome sequencing service and annotation solutions from next generation sequencing (NGS) technology to guide personalized medicine based on an individuals' genetic information.
Infrastructure:
We are taking high-throughput computation and informatics seriously, and are constantly upgrading our server farm and softwares to enable cutting-edge bioinformatics for state-of-the-art genomic analysis. To that end, we house our infrastructure at a world class data center. Our server farm is located in San Diego, California at the ScaleMatrix facility.
Other services offered by Diagnomics:
| Service | Description | Price |
|---|---|---|
| SNP / Indel Mapping | Inquire | |
| SNP / Indel Calling | Inquire | |
| Targeted Capture Analysis | Inquire | |
| Genome Annotation | Inquire | |
| Variant Annotation | Inquire | |
| Base Calling | Inquire |
Genevia Technologies
FinlandGenevia Technologies provides a wide range of microarray and next generation sequencing data analyses, and bioinformatics services to life science companies and academia. In addition, we offer bioinformatics consulting projects at a fixed price, and genome-wide experiments done in collaboration with the top service providers.
Expertise:
Our expertise is in handling multiple microarray (expression, copy number, ChIP, methylation, etc) and next-gen sequencing (DNA-seq, RNA-seq, MeDIP-seq, ChIP-seq, GRO-seq, etc) data simultaneously and effectively, and combining them with other data such as clinical variables or pathway information. We have experience in most common mammalian systems, but especially in multiple human cancers. We have also worked on data from multiple species of lower eucaryotes and bacteria.
Infrastructure:
We have access to dedicated file storage servers, a computing cluster, a computing grid (of over 1000 CPUs), and cloud computing capabilities.
Visit our homepage to read more about us and our bioinformatics as a service: www.genevia.fi
Other services offered by Genevia Technologies:
| Service | Description | Price |
|---|---|---|
| Differential Gene Expression Analysis | Inquire | |
| Transcriptome Mapping | Inquire | |
| Comparative Genome Analysis | Inquire | |
| Custom scripting and special projects | Inquire | |
| Other Services | Inquire | |
| Read Filtering and Cleaning | Inquire | |
| ChIP-Seq Analysis | Inquire | |
| Small RNA Mapping | Inquire | |
| SNP / Indel Mapping | Inquire | |
| Metagenomic Analysis | Inquire | |
| SNP / Indel Calling | Inquire | |
| SNP/SV/CNV Discovery | Inquire | |
| Targeted Capture Analysis | Inquire | |
| Small RNA Annotation | Inquire | |
| Methylation Analysis | Inquire | |
| Transcriptome de novo Assembly | Inquire | |
| Transcriptome Annotation | Inquire | |
| Variant Annotation | Inquire | |
| Base Calling | Inquire |