Other services
Kovid BioAnalytics is an Informatics and Analytics company based in India. We specialize in building software, web-based or standalone applications for various bioinformatics projects, data curation and analysis services, etc. With a team of Bioinformatics experts and Software Developers we provide the following services: 1) Bioinformatics Software Development 2) Website Design and Maintenance for Bioinformatics Services 3) Curation of Genomics/Proteomics Data 4) Manual annotation of bioinformatics data and data mining 5) Technical writing services 6) Significance Analysis of micro-array data
Years in service: 12Other services offered by Kovid BioAnalytics Pvt. Ltd.:
Service | Description | Price |
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Differential Gene Expression Analysis | We have experience in performing Differential Gene Expression Analysis for various researchers from institutes like Washington University at St. Louis, West Mead Hospital (Australia), Spain Cancer Center and Bar Ilan University (Israel), etc. | $16.57 USD (per hour) |
Other Services | We have a team of 5 experienced Bioinformatics Experts and 2 web developers, that can built custom pipelines for NGS data analysis, web applications, data mining tools, websites, etc. | $16.57 USD (per hour) |
ChIP-Seq Analysis | $20.00 USD (per hour) | |
Metagenomic Analysis | We provide Metagenomic Analysis services including data curation as well as analysis. | $15.57 USD (per hour) |
Genome Annotation | $15.00 USD (per hour) | |
Variant Annotation | We provide variant annotation services that include manual annotation of variants using public databases as well as annotation through automated pipelines/tools like GEMINI. | $16.57 USD (per hour) |
We offer tailored bioinformatics services (mainly NGS data analysis) to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software.
We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently.
We replicate recommended analysis pipelines (best practice) or develop novel ones but we always emphasize biological interpretation of your data.
Years in service: 11Other services offered by Geno-plex Bioinformatics Services:
Service | Description | Price |
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Transcriptome Mapping | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
Custom scripting and special projects | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | Inquire |
Other Services | Primer design for efficient multiplex PCR reactions | Inquire |
Exome Analysis | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
Genome Mapping | We replicate recommended analysis pipelines (best practice) using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently. | Inquire |
SNP / Indel Calling | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
SNP/SV/CNV Discovery | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
Targeted Capture Analysis | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
Variant Annotation | We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… | $150.00 USD (per sample) |
For more than 50 years, the Garvan Institute of Medical Research has led scientific discovery and pioneered insights in the areas of cancer, metabolic, neurological, immunological and bone disease.
We were one of the first sites in the world to acquire the Illumina HiSeq X Ten sequencing platform, which provides the opportunity for low cost and large scale whole human genome sequencing.
Garvan was uniquely positioned to leverage its advanced sequencing infrastructure, comprehensive computational architecture, innovative data analysis and archiving solutions. Garvan has become a world-leading hub of expertise in generation, analysis, interpretation and application of genomic data.
The laboratory operates with a dual purpose; • providing the global research community access to best-in-class WGS technology and data analysis • offering Australia’s first accredited (ISO 15189) WGS-based pathology service to the clinical community
We have sequenced and delivered >16,000 human and non-human genomes on the X Ten platform to date and have the capacity to run ~1200 genomes per month. Please see below for our deliverables for this service:
Deliverables • Clinically accredited laboratory (ISO 15189) • Human and non-human whole genome sequencing • TruSeq Nano DNA or PCR-Free library preparation • Includes DNA and library QC • Flexible choice of 15x (TruSeq Nano) or 30x coverage for human DNA (as defined by Illumina^) • Flexible choice of ≥50Gb (TruSeq Nano) or ≥100 Gb raw data • 150bp paired-end read length • ≥75% bases above Q30 • Delivery of FASTQ data via online portal DNAnexus with clinical-grade security and privacy
Options • Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files • Hard drive delivery
^ in line with Illumina’s ‘Sequencing Coverage Calculation Methods for Human WGS’ documentation
Years in service: 12Other services offered by KCCG Sequencing Laboratory, Garvan Institute of Medical Research:
Service | Description | Price |
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Other Services | Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files Our team achieved the highest overall precision in detecting SNPs in the unknown genome, in an international competition designed to test the performance of genome informatics pipelines worldwide. The team’s precision level o… | $275.00 USD (per sample) |
At Insightomics we specialize in bioinformatics data analysis services. Our team is able to deliver state-of-the-art bioinformatics methodologies to support Life Sciences R&D involving clinical and omics data.
We have experience working with human data and bacterial (S. pneumoniae) data.
Other services offered by Insightomics:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | Contact us to discuss your specific project or data analysis needs. | Inquire |
Custom scripting and special projects | Contact us to discuss your specific project or data analysis needs. Consult with our bioinformatics software development experts and data scientists. | Inquire |
Other Services | Exploratory data analysis. Graphical techniques to uncover the data structure and gain insights. Let the data speak for itself. | Inquire |
Other Services | Machine learning – Supervised learning. Machine learning models for discriminating data, for instance logistic regression, K-nearest neighbors, Support Vector Machines. | Inquire |
Other Services | Deep learning. Apply state-of-the-art neural network methodologies in multiple bioinformatics contexts. | Inquire |
Other Services | Bioinformatics pipeline alignment. Choose the most appropriate data analysis pipeline. | Inquire |
Other Services | Machine learning – Unsupervised learning. Models for clustering data, for instance K-means, hierarchical clustering, mixture models. | Inquire |
Other Services | Scientific Consulting. Advisory on statistical and machine learning methods applied to specific research goals in the life sciences. Technology alignment. | Inquire |
Other Services | Dimensionality reduction. Feature selection and mapping of data to a lower dimensionality. Principal Component Analysis (PCA), multidimensional scaling. | Inquire |
Other Services | Rapid BioApp Delivery. Development of new bioinformatics apps, accelerated by Insightomics Platform and powered by Insightomics Rapid BioApp Delivery methodology. | Inquire |
Other Services | Principal Component Analysis (PCA) | $250.00 USD (flat price) |
Other Services | Network and pathway analysis. Statistical overrepresentation testing. Gene set enrichment analysis. Molecular and genetic interaction graph analysis and visualization. | Inquire |
Other Services | Probabilistic Bayesian modelling. State-of-the-art robust modelling for specific bioinformatics problems. | Inquire |
Other Services | Other Services. Contact us to discuss your specific project or data analysis needs. | Inquire |
Other Services | Data validation and preprocessing. Quality control, missing value imputation, data transformation and normalization. | Inquire |
Other Services | Admixture modelling and phylogenetics. Infer the structure and evolutionary history of populations from genetic data. | Inquire |
Other Services | Statistical hypothesis testing. Parametric and nonparametric tests applicable in a wide variety of contexts. Multiple hypothesis testing (Bonferroni correction, false discovery rate). | Inquire |
Other Services | Survival analysis. Analyse censored time-to-event data with tools such as Cox regression and log-rank testing. | Inquire |
The Service at Diagenode are specialized in Epigenomics so we focused on Chromatin, DNa methylation and RNA studies. For chromatin we perform ChIP-seq (-qPCR) and ATAC-seq. In terms of DNA methylation we offer WGBS, RRBS, MeDIP-seq, Targeted DNA methylation, Illumina 850K EPIC Array and Mouse Methylation Array. Concerning RNA-seq we perform Total RNA-seq (rRNA depeltion), mRNA-seq (Poly-A selection), 3'RNA-seq, sncRNA-seq and miRNA-seq. We have a wide range experien,ce in terms of species and samples type, with special focus in biofluids (plasma/serum/urine cfDNA, circulating RNA, etc)
Years in service: 10Other services offered by Diagenode:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Other Services | Inquire | |
ChIP-Seq Analysis | Inquire | |
Methylation Analysis | Inquire |
I approach analytic challenges creatively with the result being novel, statistically significant and reproducible. I have high expertise on differential expression using RNA-seq.
Expertise:
I've been working with whole genome experiments for the last 10 years. I analysed more than 1000 gene expression microarrays (Illumina and Affymetrix, Human, Mouse, Rat and Pig). I analysed RNA-seq samples (total RNA and polyA RNA) from SOLiD 5500xl and Ion Proton, ChIP-seq samples from Illumina HiSEQ and DNA-seq (Exome) samples from Illumina HiSEQ. I developed several tools for functional analysis (see cremag.org) of gene lists.
I have almost unlimited access to Amazon EC2 and large server on site (two 8x core Xeon with 216 GB RAM 64GB of SAS disks)
Other services offered by intelliseq:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Read Filtering and Cleaning | Inquire | |
ChIP-Seq Analysis | Inquire | |
Small RNA Mapping | Inquire | |
SNP / Indel Mapping | Inquire | |
Metagenomic Analysis | Inquire | |
SNP / Indel Calling | Inquire | |
Genome Annotation | Inquire | |
Methylation Analysis | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire |
EarlyDx is committed to providing cutting-edge non-invasive genomics technologies and best-in-class early disease diagnostics. Our proprietary cfDNA-based technologies, in combination with powerful AI algorithms, have shown great potential to transform non-invasive biomarker discovery, diagnostics, and precision medicine for almost any diseases, including cancers, aging, metabolic diseases, autoimmune diseases, imprinting diseases, and neurological diseases.
Our key cfDNA-based best-in-class technologies include:
Please check out our relevant publications in details: https://earlydx.com/technologies/publications/
Years in service: 2Other services offered by EarlyDx:
Service | Description | Price |
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Genevia Technologies provides a wide range of microarray and next generation sequencing data analyses, and bioinformatics services to life science companies and academia. In addition, we offer bioinformatics consulting projects at a fixed price, and genome-wide experiments done in collaboration with the top service providers.
Our expertise is in handling multiple microarray (expression, copy number, ChIP, methylation, etc) and next-gen sequencing (DNA-seq, RNA-seq, MeDIP-seq, ChIP-seq, GRO-seq, etc) data simultaneously and effectively, and combining them with other data such as clinical variables or pathway information. We have experience in most common mammalian systems, but especially in multiple human cancers. We have also worked on data from multiple species of lower eucaryotes and bacteria.
We have access to dedicated file storage servers, a computing cluster, a computing grid (of over 1000 CPUs), and cloud computing capabilities.
Visit our homepage to read more about us and our bioinformatics as a service: www.genevia.fi
Other services offered by Genevia Technologies:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Comparative Genome Analysis | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Read Filtering and Cleaning | Inquire | |
ChIP-Seq Analysis | Inquire | |
Small RNA Mapping | Inquire | |
SNP / Indel Mapping | Inquire | |
Metagenomic Analysis | Inquire | |
SNP / Indel Calling | Inquire | |
SNP/SV/CNV Discovery | Inquire | |
Targeted Capture Analysis | Inquire | |
Small RNA Annotation | Inquire | |
Methylation Analysis | Inquire | |
Transcriptome de novo Assembly | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Base Calling | Inquire |
Gringene Bioinformatics provides workflow optimisation services for research that involves the use of computers, enabling researchers to carry out their research faster, cheaper, and better. It is frequently the case that a repetitive task using computers can be sped up 5-10 times by the application of computing methods that are more appropriate to the task at hand.
Main processing workstation: 12-thread Intel "desktop" with 64GB memory and 3TB hard drive space (expandable as necessary). I encourage clients to purchase their own bioinformatics servers / workstations, and will use remote systems for analysis when available.
Other services offered by Gringene Bioinformatics:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Genome Mapping | Inquire | |
Transcriptome de novo Assembly | Inquire | |
Whole Genome de novo Assembly | Inquire |
NGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.
Our expertise is in the epigenetics field in mouse and human organisms.
we will provide FTP access to our storage server to upload raw data and download analyzed data.
Other services offered by Next Generation Intelligence:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Transcriptome Mapping | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | Inquire | |
Read Filtering and Cleaning | Inquire | |
Exome Analysis | Inquire | |
ChIP-Seq Analysis | Inquire | |
Small RNA Mapping | Inquire | |
SNP / Indel Mapping | Inquire | |
Genome Mapping | Inquire | |
SNP / Indel Calling | Inquire | |
SNP/SV/CNV Discovery | Inquire | |
Targeted Capture Analysis | Inquire | |
Genome Annotation | Inquire | |
Small RNA Annotation | Inquire | |
Methylation Analysis | Inquire | |
Transcriptome de novo Assembly | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Base Calling | Inquire |
ContigExpress is the leading integrated genomics data service provider. We offer genomic project management, data analysis, and bio-IT consulting services. Our unique value to our clients lies in our deep understanding of both biology and informatics. From project consultation, bio-IT infrastructure implementation, to data analysis, our experienced scientists deliver not only cost-effective customized informatic solutions but also their expert insights.
Our team consists of Ph.D.-level computational biologists with extensive training and professional practice in bioinformatics and genomic research. We understand both your cutting-edge research and your informatics challenges. We enable you and your team to extract actionable information from the vast amount of genomic data in a cost-effective and timely fashion.
We at ContigExpress strive to deliver affordable expert genomic data solutions to researchers and clinicians. We place the utmost emphasis on information confidentiality, data security, and data integrity. Please schedule a complimentary project discussion with one of our expert bioinformaticians to discover how we can help you move your genomics research forward!
Years in service: 15Other services offered by ContigExpress, LLC:
Service | Description | Price |
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Differential Gene Expression Analysis | Following is a list of common analysis items for RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Gene and transcript-based quantitation, RPKM/FPKM-based quantitation, Raw hit count-based … | Inquire |
Other Services | We are a professional bioinformatics service provider and we are happy to provide customized informatic solutions to your unique research and business needs. Please feel free to reach out to us to discuss how we can help you. | Inquire |
Exome Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
ChIP-Seq Analysis | Following is a list of common analysis items for ChIP-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Peaking calling with or without control samples 5) Gene assignment and peak annotation 6)… | Inquire |
Small RNA Mapping | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
Genome Mapping | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
Metagenomic Analysis | Following is a list of common analysis items for Metagenomics Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Sequence assembly 4) Biodiversity analysis and binning 5) Gene predication and functional annotation 6) Gene Ontology and path… | Inquire |
SNP/SV/CNV Discovery | Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP/small indel char… | Inquire |
Targeted Capture Analysis | Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Alignment to a reference with mapping statistics 4) Local realignment 5) SNP and small indel calling 6) SNP… | Inquire |
Genome Annotation | Following is a list of common analysis items for Genome Annotation. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Gene prediction with or without RNASeq data 3) BLAST-based gene function annotation 4) Written project report with analysis methods, publication-ready graph… | Inquire |
Small RNA Annotation | Following is a list of common analysis items for small RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC, adaptor removal, and size selection 3) Read characterization by mapping to a reference genome sequence, known RNA families (e.g., Rfam), and known micr… | Inquire |
Methylation Analysis | Following is a list of common analysis items for Methylation Sequencing, including MeDIP-Seq, hMeDIP-Seq, RRBS / Targeted Bisulfite-Seq, WGBS, and 5-mc RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Methylation state-sensitive mapping 4) … | Inquire |
Transcriptome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Transcriptome assembly, scaffolding and gap closure 4) Gene annotation (molecular function, Gene Ontology and pathways) 5) SNP disc… | Inquire |
Transcriptome Annotation | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Project consultation 2) Transcriptome annotation (molecular functions, Gene Ontology and pathway) 3) Written project report with analysis methods, publication-ready graphics, and references | Inquire |
Whole Genome de novo Assembly | Following is a list of common analysis items for De Novo Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project. 1) Experiment design consultation 2) Data QC and clean up 3) Contig assembly 4) Scaffolding and gap closure 5) Gene/ORF prediction 6) Gene annotation and classification via database search and… | Inquire |
We offer a powerful genomics software platform that makes various bioinformatics tasks fairly straightforward to perform and deliver to customers. We also wrap this product with various service offerings for folks interested in one-off projects that deliver results rather than just subscribing to a software solution and then do the work themselves. We are comfortable with both scenarios. We are well versed in working with RNA-Seq, Genomes, Exomes, targeted panels, miRNA-Seq, Copy Number, Gene Expression, Protein Expression, and DNA Methylation from the level of raw sequencing reads or chip data all the way through to statistically-driven and knowledge-driven interpretations.
We are experienced in developing bioinformatics pipelines, providing data management solutions, analyzing the data using statistical methods and knowledge driven methods, and delivering professional-grade results. We are most familiar with human genomics projects, but have experience with other organisms as well. We are most focused on supporting sequencing projects, but are very capable of supporting array and PCR-based projects as well.
We leverage Amazon Web Services for most of our storage (EBS & S3) and computational resources (EC2). We are not frivolous about security, and we can provide you with security documentation to demonstrate how we leverage cloud resources while keeping best-in-class security. We also have powerful 16-core machines in our own private cloud that we leverage for service projects as well.
Years in service: 14Other services offered by Station X:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | $1655.00 USD (flat price) | |
Transcriptome Mapping | $100.00 USD (per sample) | |
Comparative Genome Analysis | $2500.00 USD (flat price) | |
Custom scripting and special projects | $275.00 USD (per hour) | |
Other Services | Visualizations, Report Generation, Customizations to our platform, Training, Scientific support, Presentation support, etc. | $300.00 USD (per hour) |
Read Filtering and Cleaning | $115.00 USD (per sample) | |
Exome Analysis | $2500.00 USD (flat price) | |
Small RNA Mapping | $100.00 USD (per sample) | |
SNP / Indel Mapping | $100.00 USD (per sample) | |
SNP / Indel Calling | $100.00 USD (per sample) | |
SNP/SV/CNV Discovery | $100.00 USD (per sample) | |
Genome Annotation | $85.00 USD (per sample) | |
Small RNA Annotation | $85.00 USD (per sample) | |
Transcriptome Annotation | $85.00 USD (per sample) | |
Variant Annotation | $85.00 USD (per sample) |
TAGCC is an African company offering services in next generation sequence data analysis and consultancy in genomics. We have implemented a wide range of pipelines to analyse NGS data from various platforms including Illumina and 454. We support design and implementation of genomics and NGS based projects.
Years in service: 10Other services offered by The Africa Genomics Centre and Consultancy (TAGCC) ltd:
Service | Description | Price |
---|---|---|
Differential Gene Expression Analysis | We Identify differentially expressed and significant genes from RNA-seq data. Our workflow includes QC clean up, removal of ribosomal RNA contamination followed by denovo or reference based mapping. RPKM/FPKM-based quantitation. | $80.00 USD (per sample) |
Transcriptome Mapping | Map mRNAs to either the reference or the assembled genome. | $110.00 USD (per sample) |
Other Services | Admixture modelling and SNP phylogenetics. Use genetic data to infer the structure and evolutionary history of populations (Time is dependent on VCF/PED file size) | $225.00 USD (per hour) |
Read Filtering and Cleaning | QC analysis, trimming and low quality reads removal. Both Raw and QC trimmed Fastq files will be made available. | $24.00 USD (per sample) |
Exome Analysis | We analyse full exomes from raw sequence data through the process of cleaning, alignment, variant calling to analysis ready vcf file with variants effects summary. | $125.00 USD (per sample) |
SNP / Indel Mapping | Map SNPs and Indels. | $110.00 USD (per sample) |
Genome Mapping | Alignment of NGS data to reference genome and generate mapping statistics | $60.00 USD (per sample) |
Metagenomic Analysis | Generating publication ready Phylogenetic trees, Alpha and beta-diversity, rarefactions, rank abundance plots, relative abundance bar plots, with integration of meta-data, etc. | Inquire |
SNP / Indel Calling | Identify and qualify SNPs and Indels. | $110.00 USD (per sample) |
Base Calling | Demultiplex data and convert BCL or SFF files to FASTQ files. (Time is dependent on file size) | $120.00 USD (per hour) |
The OMRF Genomics facility is a universally accessible resource able to provide investigators with massive amounts of sequencing, genotyping, or gene expression data in a relatively short period of time. Our NovaSeq X Plus, NovaSeq 6000, and NextSeq 2000 instruments combine to provide researchers extreme flexibility in a very cost-efficient manner.
Years in service: 15Other services offered by Oklahoma Medical Research Foundation NGS Core:
Service | Description | Price |
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Read Filtering and Cleaning | Read trimming of sequencing results | $50.00 USD (flat price) |
Read Filtering and Cleaning | Adapter and base quality trimming to specified level using Trimmomatic. Both Raw and trimmed Fastq will be made available. | $50.00 USD (flat price) |
Exome Analysis | Full exome analysis from raw data to vcf file. Includes read trimming, alignment to reference with BWA, and variant calling utilizing the most up to date GATK pipeline. Deliverable will be a clean, filtered, analysis ready vcf file. Raw data will also be returned. | $150.00 USD (per sample) |
Genome Mapping | Alignment of NGS data to reference genome using BWA. | $25.00 USD (per sample) |
Bioinformatics Services for Plant Scientists and Breeders by Computomics
At Computomics.com, we deliver in-depth NGS analyses. We start by identifying your breeding or research goals, devise a sequencing strategy to achieve them and define the project deliverables and timeline through an initial consultation. Our methods include the latest algorithms from the bioinformatics community.
We protect the security of your data. We use high-performance servers in a high-security data center with two-factor access control mechanisms. During the analysis, we use transparent, reliable processes and quickly deliver highly reproducible results in constant feedback with you, via virtual or onsite meetings at your location.
Our NGS products are exclusively focusing on plant species and their interacting microbes, and include:
Computomics collaborates with world-leading scientists, opening up an unprecedented opportunity for breeders and plant scientists. We provide data of the highest possible quality that expedite your crop improvement programs.
Years in service: 12Other services offered by Computomics:
Service | Description | Price |
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Differential Gene Expression Analysis | Gene expression studies, or RNAseq allow you to sequence the entire transcriptome of a plant, and provide valuable applications in crop improvement programs We and our collaborators have published peer reviewed methods for accurate gene expression analysis. Our RNAseq analyses can determine exact gene expression levels including splice variants. Using machine learning techniques, we identify dif… | Inquire |
Comparative Genome Analysis | We excel at managing complex crop genomic variance studies. Our analysis can help you obtain a set of genomic markers to enhance rational and controlled breeding procedures. Markers may include single nucleotide polymorphisms (SNPs), insertions and deletions (InDels), copy number variations (CNVs) or structural variants (SVs). Taking into account the properties of your plant of interest and the … | Inquire |
Other Services | Bioinformatics Consulting In addition to our next-generation sequencing (NGS) products and services, We also offer individual consulting services. With a team of scientists and partners who are thought leaders in crop genomics, we give impartial advice, independent of any sequencing platform, technology or tool suite. Each consultation is unique, please contact us to receive a quote for your sp… | Inquire |
Other Services | Introgression and Insertion Delineation Next-generation sequencing is a great tool for molecular characterisation of seeds with genetic modifications or introgressions. We can provide answers to many regulatory and safety related questions, such as: At how many sites was the DNA integrated into the plant genome? What is the exact sequence of each insert? Is the sequence rearranged with respect t… | Inquire |
Other Services | Genomic Selection with Continuous Model Improvement Genomic Selection with Continuous Model Improvement Genomic selection is a highly successful strategy to predict breeding values in plants. Advances in sequencing and high-throughput variant discovery enable the collection of tens of thousands of markers for hundreds of plants, providing exciting opportunities for unleashing the full power of g… | Inquire |
Read Filtering and Cleaning | Inquire | |
Metagenomic Analysis | World’s Fastest, Most Accurate Metagenomics Plants interacts constantly with soil-borne microbes. These interactions vary from symbiotic to pathogenic. In a metagenomics study of the rhizosphere, DNA or RNA are sequenced using next generation sequencing instruments. Sequences that do not originate from the plant host are analysed to identify genes and species contained within the sample. A tax… | Inquire |
Genome Annotation | We perform de novo genome annotation using the latest in silico predictive approaches and RNAseq reads. We offer two machine learning-based gene prediction methods that can be trained to recognise biological features in your crop’s genome. The resources we use to build an annotation map include existing annotations for related organisms, RNAseq data, and PacBio complete isoforms. We use all avai… | Inquire |
Methylation Analysis | Statistically Sound Epigenetics Non-genetic factors affect crops traits and phenotypes. Identifying epigenetic patterns allow breeders and plant scientists to uncover expression correlations and non-genetically inherited gene regulation patterns. We specialize in crop epigenetics. Methylation of cytosine residues is a known mechanism for gene silencing and gene expression regulation. We use bi… | Inquire |
Whole Genome de novo Assembly | We have a deep understanding of both de novo and reference-based genome assembly of large crop genomes. It is crucial to first develop an effective strategy before selecting the appropriate sequencing technology and bioinformatics tools. A de novo genome assembly project must address sources of error up front, like sequence bias and read quality. A crucial point is quality control. We compare o… | Inquire |
UCLA Technology Center for Genomics & Bioinformatics (UCLA TCGB) (http://pathology.ucla.edu/tcgb), directed by Dr. Xinmin Li, has 9 Ph.D. level scientists and a total staff of 12, who together have 76 years combined genomics experience. This high throughput genomic Center equipped with all major next generation sequencing instruments, sophisticated bioinformatics tools and big data management systems . The TCGB has Miseq, Nextse, Hiseq, Novaseq, GridION, 10x single cell Chromium system, 10X connect system, Nanostring GeoMx DSP system, automated NGS library construction system, which allow us offering comprehensive services including WGS, WES, RNAseq, Chipseq, Methyseq, 10X single cell sequencings, GeoMx DSP spatial transcriptome sequencing and so on. The TCGB provides these services in a cost-effective and timely manner with guaranteed quality.
Years in service: 17Other services offered by UCLA Technology Center for Genomics & Bioinformatics (TCGB):
Service | Description | Price |
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Other Services | NGS Full Data Analysis - Genome Alignment, Gene Count Quantification, Gene Count Normalization, Differential Expression Analysis, Gene Ontology & Pathway Analysis | $321.56 USD (per sample) |
Other Services | Data Analysis - Single Cell or Spatial Transcriptomics Analysis | $477.36 USD (per sample) |
Other Services | Data Analysis Partial, NGS - Genome Alignment, Gene Count Quantification, Gene Count Normalization | $202.22 USD (per sample) |
Other Services | Data Analysis - Custom Project | $122.66 USD (per hour) |
We offer computational analyses of Next-Generation Sequencing data (Illumina and Ion Torrent platforms), including RNA-seq, small RNA-seq, DNA-seq, Bisulfite-seq and ChIP-seq. Our bioinformatics support can be fully customized for your research needs, the scope and objectives of the study. We apply only up-to-data well-proven software and pipelines working under Unix/Linux environment. Optionally, our experts can help to interpret the obtained results from the scientific point of view, provided some of them are working in a close research field.
Other services offered by SciBerg:
Service | Description | Price |
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HybridStat is a company bringing together a team of highly qualified and motivated scientists and developers, whose expertise spans a variety of statistics and computer science domains. Main HybridStat’s services are centered on bioinformatics, biostatistics and analytics of high-throughput data derived from modern biological technologies such as Next Generation Sequencing (NGS), DNA microarrays and Mass Spectrometry. In addition, HybridStat offers customized software solutions regarding the above.
Regarding NGS, HybridStat offers a variety of one-stop shop data analysis and analytics services, spanning from genome alignments and preprocessing of raw short read fragments, up to analytical and specialized reports and figures describing the results of various NGS protocols including RNA-Seq (quality control, differential expression and splicing analysis, biochemical pathway enrichments etc.), ChIP-Seq (data normalization and peak calling, gene-binding site associations, methylation profiles, motif finding etc.), Whole Exome and Whole Genome Sequencing (data preprocessing, variant calling, filtering, annotation and interpretation, etc.) and Single Cell Sequencing data analysis, using both open source and optimized proprietary pipelines.
HybridStat, can also offer complete support to your organization through its advanced Whole Exome Sequencing analytics platform Clingon (www.clingon-mds.com). Clingon is a complete, integrated one-stop clinical genomics and medical decision support platform which performs data analysis from raw data up to the generation of clinical reports. It uniquely integrates and curates a handful of resources regarding gene-disease and gene product-drug associations as well as curated variant annotation data towards more timely and accurate results and the optimal design of personalized treatment plans.
Years in service: 10Other services offered by HybridStat Predictive Analytics:
Service | Description | Price |
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Differential Gene Expression Analysis | A fully descriptive and interactive report is provided. | $300.00 USD (flat price) |
Comparative Genome Analysis | $60.00 USD (per hour) | |
Custom scripting and special projects | $70.00 USD (per hour) | |
Other Services | $70.00 USD (per hour) | |
Read Filtering and Cleaning | $25.00 USD (per sample) | |
Read Filtering and Cleaning | $30.00 USD (per sample) | |
Read Filtering and Cleaning | $20.00 USD (per sample) | |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $150.00 USD (per sample) |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $170.00 USD (per sample) |
Exome Analysis | Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. | $200.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $70.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $85.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. | $100.00 USD (per sample) |
SNP / Indel Mapping | $30.00 USD (per sample) | |
SNP / Indel Mapping | $25.00 USD (per sample) | |
SNP / Indel Mapping | $40.00 USD (per sample) | |
Genome Mapping | $25.00 USD (per sample) | |
Genome Mapping | $20.00 USD (per sample) | |
Genome Mapping | $30.00 USD (per sample) | |
SNP / Indel Calling | $40.00 USD (per sample) | |
SNP / Indel Calling | $45.00 USD (per sample) | |
SNP / Indel Calling | $50.00 USD (per sample) | |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $40.00 USD (per sample) |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $50.00 USD (per sample) |
Variant Annotation | Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. | $60.00 USD (per sample) |
Whole Genome de novo Assembly | $1000.00 USD (flat price) |
DATA ANALYSIS Routine NGS data analysis in the area of genomics and transcriptomics, such as: - Gene expression and differential expression analysis - De novo and ab initio transcriptome assembly - Small RNA analysis - Genome variant calling and annotation
Customized tasks, including: - Identification of long noncoding RNAs - Identification of ta-siRNAs - Isomir and miRNA editing analysis - Annotation of non-model organisms - Building transcriptome-wide maps of RNA-RNA interactions
WORKSHOPS We offer workshops in a broad spectrum of bioinformatics applications, including: - RNA-Seq data analysis (4 days) - NGS in medical research (4 days)
EXPERIENCE We’ve been in the market since 2013 and came into collaboration with hundreds of customers. We’ve been working on model and non-model organisms, including viruses, bacteria, fungi, plants, animals, and human. We are part of research consortium aiming at development of personalized medicine services for diagnosis and treatment of lung cancers. We are also actively conducting research projects in different areas of genomics and transcriptomics, which gives us expertise in standard and up-to-date bioinformatics solutions.
INFRASTRUCTURE We have access to dedicated file storage and computational servers, with virtually unlimited (on demand) capacity.
Years in service: 11Other services offered by ideas4biology Ltd.:
Service | Description | Price |
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Differential Gene Expression Analysis | This includes: - quality filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - read mapping - expression estimation - differential expression analysis - a report, result data files and diagnostic plots Differential expression analysis itself, with expression estimations from customer: $30. | $185.00 USD (per sample) |
Transcriptome Mapping | This includes: - quality check and filtering - adapter trimming - optional: discarding rRNA-mapping reads and other contaminants - read mapping (default or customized settings) - read mapping report and result files | $100.00 USD (per sample) |
Other Services | Identification of long noncoding RNAs in animals and plants. This includes: - assessment of protein-coding potential with at least two independent methods - sequence length filtering - discarding of known, coding transcripts - discarding known noncoding RNAs other than lncRNAs - optionally: genomic context-driven filters - other filtering steps, depending on data availability, such as tran… | $50.00 USD (per hour) |
Read Filtering and Cleaning | This includes: - Quality report - Quality filtering - Adapter trimming - Optionally: discarding rRNA-mapping reads or other contaminants | $46.00 USD (per sample) |
Small RNA Mapping | This includes: - quality check and filtering - adapter trimming - read mapping to custom sequences (genome, transcriptome) - read mapping quality assessment - read mapping report This may be followed by miRNA identification or similar tasks, priced separately. | $130.00 USD (per sample) |
Genome Mapping | This includes: - quality check and filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - read mapping with varied tools and settings - accomodated to customer's needs - quality report | $85.00 USD (per sample) |
SNP / Indel Calling | This includes: - quality check and filtering - adapter trimming - read mapping and further processing of mapping results - SNP / Indel calling Both somatic and germline variants may be called. There is possibility to call structural variants as well, priced separately. | $165.00 USD (per sample) |
Small RNA Annotation | This includes: - quality check and filtering - adapter trimming - read mapping to databases of noncoding RNAs, such as miRBase, DASHR or RFAM - annotation report | $150.00 USD (per sample) |
Methylation Analysis | This includes: - quality check and filtering - adapter trimming - read mapping - calling methylated and unmethylated cytosines - differential methylation analysis: finding differentially methylated bases and regions | $250.00 USD (per sample) |
Transcriptome de novo Assembly | This includes: - quality check and filtering - adapter trimming - optionally: discarding rRNA-mapping reads or other contaminants - transcriptome de novo assembly - a quality report and a transcriptome in FASTA format For further annotation of the transcriptome, please see our offer for "Transcriptome annotation". | $250.00 USD (per sample) |
Transcriptome Annotation | This includes: - BLAST searches against databases of proteins and noncoding RNAs, including miRBase, RFAM, UniProt (Swiss-Prot) - hmmscan search against PFAM protein domains - assignment of GO terms to genes - assignment of KEGG pathways to genes - a report and annotation files with per gene details | $125.00 USD (per sample) |
Variant Annotation | This includes: - prediction of possible consequences associated with predicted variants, such as affecting splicing of protein coding capacity - comparison with known variants from public databases - a report and result files | $150.00 USD (per sample) |
Our facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.
Years in service: 12Other services offered by Omega Bioservices:
Service | Description | Price |
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Differential Gene Expression Analysis | Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. | $56.00 USD (per sample) |
Differential Gene Expression Analysis | Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. | $110.00 USD (per sample) |
Transcriptome Mapping | Map mRNAs to either the reference or the assembled genome. | $332.00 USD (per sample) |
Custom scripting and special projects | We provide study specific bioinformatics analysis (known as tertiary analysis). such as (not limited to) 1) process secondary sequencing data analysis for a variety of platforms such as Nanostring, Nanopore, single cell expression. 2) integrative analysis across sequencing platforms (such as DNA-seq, RNA-seq, Chip-seq) 3) integrate meta/clinical information, perform association study and build p… | $60.00 USD (per hour) |
Read Filtering and Cleaning | Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. | $110.00 USD (per sample) |
Exome Analysis | Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. | $332.00 USD (per sample) |
ChIP-Seq Analysis | ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. | $332.00 USD (per sample) |
Small RNA Mapping | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $221.00 USD (per sample) |
SNP / Indel Mapping | Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
Genome Mapping | Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. | $110.00 USD (per sample) |
Metagenomic Analysis | Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. | $551.00 USD (per sample) |
SNP / Indel Calling | Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
SNP/SV/CNV Discovery | Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. | $332.00 USD (per sample) |
Targeted Capture Analysis | Variant call, gene annotation. Provided free of charge with sequencing service. | $332.00 USD (per sample) |
Genome Annotation | Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. | $221.00 USD (per sample) |
Small RNA Annotation | Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. | $332.00 USD (per sample) |
Methylation Analysis | The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. | $553.00 USD (per sample) |
Transcriptome de novo Assembly | Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. | $553.00 USD (per sample) |
Transcriptome Annotation | Annotate or predict functions of transcribed genes using well know gene ontology tools. | $332.00 USD (per sample) |
Variant Annotation | Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. | $332.00 USD (per sample) |
Whole Genome de novo Assembly | Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. | $3315.00 USD (per sample) |
Base Calling | Demultiplex data and convert BCL files to FASTQ files | $110.00 USD (per sample) |
Privately held, Wyzer Biosciences, Inc. was founded in 2011 and is located in dynamic Cambridge, MA, the home of Harvard, MIT and many other world-class educational and biotech institutions. Through our expertise in molecular biology we provide services to our partners and collaborators in industry and academia that will aid them in their ongoing research. Currently we are focusing on providing the Sanger, NGS (Illumina, Complete Genomics), Third-Generation (Nanopore) DNA sequencing and DNA prep services. Our company is ideally suited to solve your simple and complex sequencing needs. Over the years we have perfected all stages of Sanger sequencing workflow and are particularly well-equipped to deal with many types of difficult templates. Our strength is in fast and reliable double-strand sequence finishing, which includes primer design, contig assembly with editing and rudimentary data analysis. We provide inexpensive plasmid confirmation sequencing service that may be run on one or two platforms to get though difficult motifs and provide high quality data for the entire molecule. We provide various one-of-a-kind services along with the standard sequencing services. Our NGS and TGS services may include secondary bioinformatics analysis like data alignment to references and generation of consensus sequences. If you have some unique sequencing needs on small and medium scale, ask us. We will do our best to accommodate you. In the future we plan to expand our services and offer even wider choice of sequencing platforms and processes to better suit our customer’s needs.
Years in service: 14Other services offered by Wyzer Biosciences:
Service | Description | Price |
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Metagenomic Analysis | Minimum Units: 1 Hour | $300.00 USD (per hour) |
One Codex provides a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access.
One Codex empowers microbiologists, epidemiologists, and clinical researchers to access the wealth of data provided by modern genome sequencing technology.
Other services offered by One Codex:
Service | Description | Price |
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Metagenomic Analysis | One Codex provides a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access. | Inquire |
Microbiome Analysis | We provide a web-based data platform for identifying microbes in mixed or isolate samples using state-of-the-art metagenomic algorithms. Our technology delivers powerful and accurate microbial characterization while eliminating the need for locally-housed servers or command-line access. | Inquire |
We specialize in the services of DNA sequencing, genotyping, DNA library construction and aptamer development. Shotgun Library Sequencing, cDNA Library Sequencing, SAGE Library Sequencing, Whole Genome Sequencing and Primer Walking Sequencing. we offer high quality Re-sequencing & SNP Discovery Services. Quite a few of our staff scientists once participated in the International HapMap Project too.
extensive experience in whole genome shotgun sequencing services. Beginning from bacterial cells or genomic DNA, we provide you with accurate genome consensus sequences. We are also experienced in genome annotation and comparative genomics research. Notably our staff scientists have finished a number of whole microbial genome sequencing projects, such as the genomes of Pseudomonas bathycetes, Bacillus thuringiensis, Thermoanaerobacter tengcongensis, Streptococcus suis, and quite a few virus genomes. In addition, our in-house Laboratory Information Management System (LIMS) as well as manual basecalling ensures the highest service quality.
CD Genomics has been offering professional DNA library construction services for over 5 years. Hundreds of various cDNA libraries (such as standard cDNA library, large insert cDNA library, normalized cDNA library and subtracted cDNA library) and genomic DNA libraries (including short-insert plasmid shotgun library, large-insert plasmid shotgun library, whole genome shotgun library, Fosmid library, Cosmid library, MiniBAC and BAC library) have been constructed in our lab
CD Genomics has been dedicated to provide a full range of services to develop high quality customized aptamers for research, diagnostic and therapeutic applications. Services offered by CD Genomics include aptamer synthesis, aptamer generation, cell aptamer selection, aptamer design and modification, negative selection and so on.
Years in service: 19Other services offered by CD Genomics:
Service | Description | Price |
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Other Services | We provide statistical and bioinformatic data analysis services that help explain the large amounts of data commonly generated by next generation sequencing and genotyping experiments. Our bioinformatic staff consists of all PhD-level scientists trained in bioinformatics, biology and statistics. The software infrastructure for analysis is a combination of custom-built and open-source software. O… | Inquire |
SNP / Indel Mapping | CD genomics can help you analyze genetic variation efficiently to meet diverse research needs. By utilizing Affymetrix and Illumina array platforms, we support high-throughput and multiplex processing to meet diverse research needs, delivering high-quality data at a low per-sample cost. Advantages of SNP Microarray Custom, flexible, and scalable; High call rates (> 99%) and high accuracy; Cost-… | $80.00 USD (per sample) |
Metagenomic Analysis | Key Features and Advantages Longest average read lengths, with~50% of reads longer than 50kb, which exceeds the size of repetitive elements in the average bacterial genome. No DNA amplification. Highest consensus accuracy, low sequencing-context bias Novel bioinformatics analysis programs and pipelines Well-experienced personnel Sample Requirements: gDNA≥5 ug Sequencing Strategy: PacBio Platfo… | 120.00 |
Dreamgenics is a biotech company that offers bioinformatics analysis services for genomic, transcriptomic and metagenomic NGS data using our Genome One software. Genome One (CE-IVD certified) is an advanced tool that allows the integration of all the bioinformatics solutions required for the study, including read alignment, variant calling and annotation. Our analyses identify high-quality genomic variants through high sensitivity and specificity standards, extracting important biological information and reducing validation costs. The services that we offer are the following: WGS, WES, Gene panels, Transcriptomics (RNA-Seq) and Metagenomics. Additionally, we hand in the results using our web viewer Genome One Reports (https://www.dreamgenics.com/en/genome-one/).
The use of our bioinformatics tools allows us to offer you high-quality results in a fast and simple way. By using our analysis services, you considerably reduce costs and the investment in technological devices, informatics and qualified professionals.
Lastly, we are an ISO 9001:2015, UNE-EN ISO 13485:2018 and UNE-ISO/IEC 27001:2017 certified company which represents our commitment to provide our customers with products and services that meet the most demanding quality standards.
Years in service: 13Other services offered by Dreamgenics:
Service | Description | Price |
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Single Cell RNA-Seq Analysis | We offer Single cell RNA-Seq bioinformatic analysis from FASTQ files including: - Sequencing and mapping quality control. - Alignment of reads against reference genome. - Quantification of gene expression at the single cell level. - Reduction of data dimensionality. - Clustering or division of cells into different groups and subgroups. - Differential gene expression analysis. - Study of the evol… | $200.00 USD (per sample) |
Differential Gene Expression Analysis | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
Exome Analysis | Our bioinformatics analysis includes: Quality control, Alignment, Detection of high quality variants (SNVs, translocations and CNVs), Filtering of common variants, Annotation of variants obtained with multiple databases and prediction algorithms and Comparison between samples and extraction of recurrent variants. We will deliver the results to the Genohub data bucket as well as through our platf… | $80.00 USD (per sample) |
Transcriptome Annotation | Our RNA-Seq analysis includes: Quality control, Alignment, Quantification of gene expression, Differential gene expression analysis and Enrichment study of gene ontologies and pathways. It can also include the study of isoforms generated in alternative splicing events and the identification of other RNAs (smallRNAs and ncRNAs)*. We will deliver the results to the Genohub data bucket as well as t… | $90.00 USD (per sample) |
RealSeq Biosciences has an exceptionally fast turnaround time- typically one week. We are especially experienced in library construction from small RNAs. Small RNA libraries are prepared using our proprietary RealSeq® technology, the leader in bias reduction for small RNAs as shown by a core-facility comparison (ABRF). The starting input requirement for total RNA is as low as 1ng (RealSeq®-AC technology) or may be isolated from as little as 50ul of biofluid samples (RealSeq®-biofluids technology). We are experienced working with exosomes, plasma, serum, and whole blood samples. RealSeq Biosciences delivers fast and cost-effective mRNA sequencing services using either Nugen or NEB sequencing library preparation.
Years in service: 6Other services offered by RealSeq Biosciences Inc.:
Service | Description | Price |
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Differential Gene Expression Analysis | Reads processing and alignment. For each sequenced library: - Trimming of adapters - Alignment to the correspondent genome - We will provide raw files and processed (fastq and SAM files) mRNAs quantification - Align reads to reference transcriptome - We will provide mRNA reads counts (raw reads) Differential expression analysis (up to six groups) - Must have more than one sample 'per group' - S… | $50.00 USD (per sample) |
Differential Gene Expression Analysis | Reads processing and alignment. For each sequenced library: - Trimming of adapters - Alignment to the correspondent genome - We will provide raw files and processed (fastq and SAM files) mRNAs quantification - Align reads to reference transcriptome - We will provide mRNA reads counts (raw reads) Differential expression analysis (up to six groups) - Must have more than one sample 'per group' - S… | Inquire |
Other Services | Reads processing and alignment. For each sequenced library: - Trimming of adapters - Alignment to the correspondent genome - We will provide raw files and processed (fastq and SAM files) miRNAs quantification - Align reads to miRBase - We will provide miRNA reads counts (raw reads) Differential expression analysis (up to six groups) - Must have more than one sample 'per group' - Spreadsheet incl… | $50.00 USD (per sample) |
Other Services | Reads processing and alignment. For each sequenced library: - Trimming of adapters - Alignment to the correspondent genome - We will provide raw files and processed (fastq and SAM files) miRNAs quantification - Align reads to miRBase - We will provide miRNA reads counts (raw reads) Differential expression analysis (up to six groups) - Must have more than one sample 'per group' - Spreadsheet incl… | Inquire |
Small RNA Annotation | For organisms with a reference genome; or closely related species, we can run your FASTQ data through the miRdeep2 pipeline and give you the output files and a report that helps guide you in the organization of these files. Note, this is a freely available program and must be cited if used: (https://github.com/rajewsky-lab/mirdeep2) Cite: Marc R. Friedländer, Sebastian D. Mackowiak, Na Li, Wei Ch… | $975.00 USD (flat price) |
genexa is a genomic data analysis provider located in Switzerland. Our bioinformatics services are centered around de novo assembly of genomes and metagenomes. We focus on processing, analysis, and interpretation of your genomics data. For all our fields of expertise, we offer to perform the entire analysis workflow from raw data to documentation, but also consulting and troubleshooting if required. genexa also provides resources to run computationally demanding tasks for specific jobs if you have an existing analysis workflow, but lack the computational resources to run it on large amounts of data. For further information check: genexa.ch
Years in service: 10Other services offered by genexa Ltd:
Service | Description | Price |
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Differential Gene Expression Analysis | Inquire | |
Comparative Genome Analysis | Inquire | |
Custom scripting and special projects | Inquire | |
Other Services | We offer bioinformatics services using long-read sequencing (PacBio & Oxford Nanopore Technologies). We have several years of experience using third-gen. technologies, mainly applying these technologies for de novo assembly of individual genomes and metagenomes. We also offer transcriptomic analyses using long-read technologies. If you want to start using PacBio or Oxford Nanopore Technologies,… | Inquire |
Read Filtering and Cleaning | Inquire | |
Metagenomic Analysis | Inquire | |
SNP / Indel Calling | Inquire | |
Genome Annotation | Inquire | |
Transcriptome Annotation | Inquire | |
Variant Annotation | Inquire | |
Whole Genome de novo Assembly | Inquire | |
Base Calling | Inquire | |
Microbiome Analysis | Inquire |
World Fusion is a well-established bioinformatics and cheminformatics software developer and services supplier with offices in Japan and the US. We have been at the forefront of developing genomic and drug discovery research tools since our early work on the Human Genome Project, and offer unparalleled reliability and expertise in our services.
Our customizable services include NGS data analysis, in-silico research services, and we are annotation specialists offering the most comprehensive correlations between genes, proteins, diseases, and chemicals.
The majority of the information is generated from our proprietary genomic and drug discovery research platform and knowledge base that we have been upgrading and building upon for over 10 years. It is comprised of original in-house data, curated information from over 60 top public data sets, and a chemical dictionary containing over 75 million non-redundant chemical compounds.
Our more recently added metagenomic and metaranscriptomic analysis services are carried out using state-of-the-art, original in-house software applications.
We offer MANY additional services, please contact us about your specific needs.
Years in service: 19Other services offered by World Fusion US:
Service | Description | Price |
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Other Services | In-silico target exploration from disease - therapeutic targets, related drugs, gene and protein targets, etc. Includes an extensive annotation table with information about the disease and related diseases, SNPs, compounds, drugs, genes, proteins, and tissues. | Inquire |
Other Services | Target Prioritization helps with the selection of gene/proteins for your research, from gene expression/SNV data - the analysis provides information about compounds and the activities, assays, SNPs, diseases, domains, pathways, and references. | Inquire |
Other Services | Target prediction from chemical structure - prediction of target proteins which is based on: 1.5M compounds, 5500 protein, and 5M interactions. | Inquire |
Metagenomic Analysis | Analysis of the transcripts present in the RNA-seq data through frequency analysis of functional categories from the selected protein DB (such as COG). Result files include annotations from ligand information with related chemical compounds, pathways, and iPath. •Biological function information •Metabolic compound info from proteins •Multiple sample analysis •Bar charts, pie charts, and fr… | Inquire |
Metagenomic Analysis | 16S/28S/ITS rRNA metagenomic data analysis of the composition and diversity of microbial or fungal species from natural environments. Interactive HTML report with taxonomically classified charts & graphs, read counts, 2D, 3D, and interactive PCA plots, heat clustering maps, and self-organizing maps. •Metagenomic analysis of bacteria from species classification of taxonomic rank •Fungal metag… | Inquire |
Genome Annotation | Gene/Protein Annotation Services: • Identify relationships beween genes and proteins or diseases • Cite connections between genes or proteins and chemicals • Extract bind/inhibit chemicals from proteins or genes • Examine SNP information and association with disease • Find bind/inhibit compounds and therapeutic targets from associated disease • Gene expression prioritization from RNAseq dat… | Inquire |
Transcriptome Annotation | Expression data analysis includes over 20 kinds of annotation such as: genes (ontology, pathways), proteins, diseases, domains, ligands, and compounds. Prioritization of genes and proteins can be executed from a variety of directions. •Statistical processing from expression values •Conversion and active compound information from proteins •Inhibitor compounds and inhibitory active compounds … | Inquire |
Variant Annotation | Analysis focuses on the SNP variant amino acid change and includes annotations of related diseases, genes, proteins, assays, ligands, SNPs, domains, and chemical compounds (active compound information, crystal structure, chemical formula, activities, etc.). •Non-synonomous SNPs and chemicals influenced by mutation location •Information about the compounds and proteins affected by the amino a… | Inquire |
Established in 2014, CEN4GEN® Institute for Genomics and Molecular Diagnostics is a Canadian owned, award winning, licensed private corporation, which excels as a leader in providing diverse services for genomics applications: DNA testing / Genetic testing / Precision Medicine / Personalized Medicine / Preventive Medicine / Genome Medicine. Our distinguished team comprises of highly qualified clinicians, medical scientists, scientists, customer support personnel, product manufacturing and quality control personnel who are experienced in the services and products that we provide. CEN4GEN is proud to provide its cutting edge services so far to clients in Canada, as well as overseas countries in North America, Central America, South America, the Caribbean, Africa, Asia, Europe and the Oceania (specifically Australia and New Zealand). Our clients are from hospitals, universities, clinics, government agencies, commercial entities and private individuals.
CEN4GEN® is committed to providing you with outstanding quality, vital, cost-effective, comprehensive and cutting-edge services using leading-edge technologies.
Years in service: 10Other services offered by CEN4GEN Institute for Genomics and Molecular Diagnostics:
Service | Description | Price |
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Exome Analysis | Established in 2014, we are a Canadian owned, award winning, licensed private corporation, which excels as a leader in providing diverse services for genomics applications. We support clients by offering innovative, high quality, efficient and cost effective clinical grade bioinformatics data analysis services. We have so far supported clients from five continents who undertook our services. … | $75.00 USD (per sample) |
SNP / Indel Calling | Established in 2014, we are a Canadian owned, award winning, licensed private corporation, which excels as a leader in providing diverse services for genomics applications. We support clients by offering innovative, high quality, efficient and cost effective clinical grade bioinformatics data analysis services. We have so far supported clients from five continents who undertook our services. … | $100.00 USD (per sample) |