Custom scripting and special projects


Custom scripting and special projects

Providers offering Custom scripting and special projects (found 23)


Geno-plex Bioinformatics Services

Switzerland

We offer tailored bioinformatics services (mainly NGS data analysis) to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software.

We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently.

We replicate recommended analysis pipelines (best practice) or develop novel ones but we always emphasize biological interpretation of your data.

Years in service: 6

Other services offered by Geno-plex Bioinformatics Services:

Service Description Price
Targeted Capture Analysis We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)
Variant Annotation We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)
SNP/SV/CNV Discovery We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)
Custom scripting and special projects We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… Inquire
Genome Mapping We replicate recommended analysis pipelines (best practice) using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses independently. Inquire
SNP / Indel Calling We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)
Transcriptome Mapping We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)
Other Services Primer design for efficient multiplex PCR reactions Inquire
Exome Analysis We replicate recommended analysis pipelines (best practice) or develop novel ones according to your specifications using open source software. We build up your in house bioinformatics capacity in 2 ways: First, we provide you with the code underlying the analysis you requested. Second, we can help you to set up (cloud) computing solutions that will allow you to run and extend your analyses ind… $150.00 USD (per sample)

Parseq Lab

Czechia

Parseq Lab is experienced in: - massively parallel sequencing data analysis - client-tailored algorithms and software development - analysis pipelines deployment

We offer: - whole genome/exome and targeted sequencing data analysis - de novo assembly - SGV detection and annotation - expression analyses - metagenomics analysis - transcriptomics analysis - proteomics research - genuine task-specific workflows design - custom bioinformatics applications development - statistical data analysis

Collaborations: genomic research labs, sequencing facilities, academic and research institutions.

Years in service: 8

Other services offered by Parseq Lab:

Service Description Price

Insightomics

Portugal

At Insightomics we specialize in bioinformatics data analysis services. Our team is able to deliver state-of-the-art bioinformatics methodologies to support Life Sciences R&D involving clinical and omics data.

We have experience working with human data and bacterial (S. pneumoniae) data.

Other services offered by Insightomics:

Service Description Price
Other Services Exploratory data analysis. Graphical techniques to uncover the data structure and gain insights. Let the data speak for itself. Inquire
Other Services Machine learning – Supervised learning. Machine learning models for discriminating data, for instance logistic regression, K-nearest neighbors, Support Vector Machines. Inquire
Other Services Deep learning. Apply state-of-the-art neural network methodologies in multiple bioinformatics contexts. Inquire
Differential Gene Expression Analysis Contact us to discuss your specific project or data analysis needs. Inquire
Other Services Bioinformatics pipeline alignment. Choose the most appropriate data analysis pipeline. Inquire
Other Services Machine learning – Unsupervised learning. Models for clustering data, for instance K-means, hierarchical clustering, mixture models. Inquire
Other Services Scientific Consulting. Advisory on statistical and machine learning methods applied to specific research goals in the life sciences. Technology alignment. Inquire
Other Services Dimensionality reduction. Feature selection and mapping of data to a lower dimensionality. Principal Component Analysis (PCA), multidimensional scaling. Inquire
Other Services Rapid BioApp Delivery. Development of new bioinformatics apps, accelerated by Insightomics Platform and powered by Insightomics Rapid BioApp Delivery methodology. Inquire
Other Services Principal Component Analysis (PCA) $250.00 USD (flat price)
Other Services Network and pathway analysis. Statistical overrepresentation testing. Gene set enrichment analysis. Molecular and genetic interaction graph analysis and visualization. Inquire
Other Services Probabilistic Bayesian modelling. State-of-the-art robust modelling for specific bioinformatics problems. Inquire
Other Services Other Services. Contact us to discuss your specific project or data analysis needs. Inquire
Other Services Data validation and preprocessing. Quality control, missing value imputation, data transformation and normalization. Inquire
Other Services Admixture modelling and phylogenetics. Infer the structure and evolutionary history of populations from genetic data. Inquire
Other Services Statistical hypothesis testing. Parametric and nonparametric tests applicable in a wide variety of contexts. Multiple hypothesis testing (Bonferroni correction, false discovery rate). Inquire
Other Services Survival analysis. Analyse censored time-to-event data with tools such as Cox regression and log-rank testing. Inquire
Custom scripting and special projects Contact us to discuss your specific project or data analysis needs. Consult with our bioinformatics software development experts and data scientists. Inquire

BioInfoRx

United States of America

At BioInfoRx, we help scientists obtain biological insights from complex genomic data. We provide complete NGS analytic solutions including standard analysis of raw data, integration between multiple experiments, and online database for data mining and visualizations. We use best-practice open source tools to analyze your raw NGS data, and provide meaningful annotations and downstream data mining tools to help you infer functional insights.

As demonstrated by the numerous publications using our services or web-bases tools, our biology-centric approach has proven effective to decipher molecular mechanisms from genomic data.

Years in service: 10

Other services offered by BioInfoRx:

Service Description Price
Differential Gene Expression Analysis We use a robust pipeline with flexible statistical models to identify differentially expressed genes (DEG) from raw RNA-Seq data. The list of DEG is only part of the results we delivery. We also help you assess data quality and verify your experimental design, and deliver your data in an online database where you can perform additional data mining: 1) Adjust filter criterion for DEG 2) Search f… $99.00 USD (per sample)
Exome Analysis We use best-practice method to map reads and make variant calls. We include robust quality control metrics for exome capture performance. The variants come with rich annotation regarding effects on genes and regulatory regions. $99.00 USD (per sample)
Targeted Capture Analysis We use best-practice method to map reads and make variant calls. We include robust quality control metrics for target capture performance. The variants come with rich annotation regarding effects on genes and regulatory regions. $99.00 USD (per sample)
ChIP-Seq Analysis Finally you can unleash the full potential of your ChIP-Seq data in a quick and easy way. With the biologist-friendly web interface powered by BxChIPSeq 2.0, you can focus on the biology without worrying about hardware, software, algorithms. -Peak Report (with gene annotations, and enriched genomic regions) -De novo motif discovery, and enriched known motifs -Functional enrichment of genes (G… $99.00 USD (per sample)
Custom scripting and special projects We offer a variety of custom genomic analysis services. Our team has both strong biological and computational background, and we can tackle any questions for you. -Custom genome browser -Online genomic database -Circo plots, pathway analysis -Functional annotation of newly sequences genomes -Integrative analysis of RNA-Seq, ChIP-Seq, motif discovery, etc. $100.00 USD (per hour)

Igenbio.Inc

United States of America

Expertise:

  • Genome ORF calling: Eukaryotes and Prokaryote Genomes
  • Annotations
  • Pathway Analysis
  • Metabolic Reconstruction
  • SNP Analysis
  • Comparative Genomics
  • Integration of GWAS expression data onto genomes and pathways

Infrastructure:

Data is stored in house with a dedicated server room with 24/7 security. We compute using our proprietary algorithms internally and curate the genomes with comparative analysis platform. We have over 2,600 genomes in the data base which are manually curated. Access is provided via web or server access.

Years in service: 6

Other services offered by Igenbio.Inc:

Service Description Price
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
SNP / Indel Calling Inquire
Genome Mapping Inquire
Variant Annotation Inquire
Comparative Genome Analysis Inquire
Metagenomic Analysis Inquire
Genome Annotation Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
Whole Genome de novo Assembly Inquire

TACGenomics

United States of America

TACGenomics has a team composed of bioinformatician, molecular biologist and computer scientist who are all at Ph.D. level. Our team has the experience of hundreds of NGS data analysis projects from all over the world. The mission of TACGenomics is to help our customer to solve the biological questions. After computation analysis completed by the bioinformatician, our molecular biologist will interpret the analyzed data carefully, provide more insight into your project and help the publication of the project in the high impact journal.

Years in service: 5

Other services offered by TACGenomics:

Service Description Price
Differential Gene Expression Analysis Differentially expressed genes were identified using the edgeR program. Genes showing altered expression with p < 0.05 and more than 1.5 fold changes were considered differentially expressed. Goseq was used to perform the GO enrichment analysis and Kobas was used to performed the pathway analysis. $50.00 USD (per sample)
Transcriptome Mapping The reads were first mapped to the latest UCSC transcript set using Bowtie2 version 2.1.0 and the gene expression level was estimated using RSEM v1.2.15. TMM (trimmed mean of M-values) was used to normalize the gene expression. $50.00 USD (per sample)
Custom scripting and special projects $50.00 USD (per hour)
Exome Analysis Our team has successfully discovered a causal variant which lead to a mendelian disorder through analyzing 20 samples in three-generation family. The error rate of genotype we called in this family is only 0.2% which indicate that our pipeline detect all the SNV very accurately. $80.00 USD (per sample)
ChIP-Seq Analysis $80.00 USD (per sample)
Genome Mapping $50.00 USD (per sample)
Metagenomic Analysis $100.00 USD (per sample)
Methylation Analysis $100.00 USD (per sample)
Transcriptome de novo Assembly $100.00 USD (per sample)
Whole Genome de novo Assembly $1000.00 USD (per sample)
Microbiome Analysis $50.00 USD (per sample)

intelliseq

Poland

I approach analytic challenges creatively with the result being novel, statistically significant and reproducible. I have high expertise on differential expression using RNA-seq.

Expertise:

I've been working with whole genome experiments for the last 10 years. I analysed more than 1000 gene expression microarrays (Illumina and Affymetrix, Human, Mouse, Rat and Pig). I analysed RNA-seq samples (total RNA and polyA RNA) from SOLiD 5500xl and Ion Proton, ChIP-seq samples from Illumina HiSEQ and DNA-seq (Exome) samples from Illumina HiSEQ. I developed several tools for functional analysis (see cremag.org) of gene lists.

Infrastructure:

I have almost unlimited access to Amazon EC2 and large server on site (two 8x core Xeon with 216 GB RAM 64GB of SAS disks)

Other services offered by intelliseq:

Service Description Price
Transcriptome Annotation Inquire
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Differential Gene Expression Analysis Inquire
Variant Annotation Inquire
Transcriptome Mapping Inquire
Metagenomic Analysis Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Small RNA Mapping Inquire
Genome Annotation Inquire

Genevia Technologies

Finland

Genevia Technologies provides a wide range of microarray and next generation sequencing data analyses, and bioinformatics services to life science companies and academia. In addition, we offer bioinformatics consulting projects at a fixed price, and genome-wide experiments done in collaboration with the top service providers.

Expertise:

Our expertise is in handling multiple microarray (expression, copy number, ChIP, methylation, etc) and next-gen sequencing (DNA-seq, RNA-seq, MeDIP-seq, ChIP-seq, GRO-seq, etc) data simultaneously and effectively, and combining them with other data such as clinical variables or pathway information. We have experience in most common mammalian systems, but especially in multiple human cancers. We have also worked on data from multiple species of lower eucaryotes and bacteria.

Infrastructure:

We have access to dedicated file storage servers, a computing cluster, a computing grid (of over 1000 CPUs), and cloud computing capabilities.

Visit our homepage to read more about us and our bioinformatics as a service: www.genevia.fi

Other services offered by Genevia Technologies:

Service Description Price
Methylation Analysis Inquire
SNP / Indel Calling Inquire
Base Calling Inquire
ChIP-Seq Analysis Inquire
Targeted Capture Analysis Inquire
Variant Annotation Inquire
Small RNA Mapping Inquire
Comparative Genome Analysis Inquire
Small RNA Annotation Inquire
Transcriptome Annotation Inquire
Custom scripting and special projects Inquire
SNP/SV/CNV Discovery Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Read Filtering and Cleaning Inquire
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Metagenomic Analysis Inquire
Transcriptome de novo Assembly Inquire

Biosof LLC

United States of America

Expertise:

Expertise in mainly with plant genomes (wheat, tomato, potato, tobacco, rice, maize, diatoms and arabidopsis).

Infrastructure:

Access to over 800 cores (2.3Ghz and faster) SMP compute cluster. Access to over 50TB of raw storage. Computing infrastructure includes all commonly used bioinformatics software and databases. All computing infrastructure is maintained by a 24/7 IT service.

Other services offered by Biosof LLC:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Differential Gene Expression Analysis Inquire
Variant Annotation Inquire
SNP/SV/CNV Discovery Inquire
Comparative Genome Analysis Inquire
Custom scripting and special projects Inquire
Transcriptome de novo Assembly Inquire
Whole Genome de novo Assembly Inquire
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
Genome Mapping Inquire
Genome Annotation Inquire

Gringene Bioinformatics

New Zealand

Gringene Bioinformatics provides workflow optimisation services for research that involves the use of computers, enabling researchers to carry out their research faster, cheaper, and better. It is frequently the case that a repetitive task using computers can be sped up 5-10 times by the application of computing methods that are more appropriate to the task at hand.

Gringene Bioinformatics has particular skills in the following areas:

  • Theoretical Genetics
  • Next-Generation Sequencing
  • Computational scripting
  • Large-scale data analysis
  • Program language translation (porting)
  • Debugging / bug reporting

Expertise:

  • Homo sapiens (genome mapping, methylation analysis, SNP analysis, STR analysis, population clustering, haplotype analysis, differential expression analysis)
  • Environmental samples (16s rRNA mapping, large-scale BLAST analysis, taxonomy analysis)
  • Schmidtea mediterranea (transcriptome assembly, genome mapping, transcriptome mapping, differential expression analysis)
  • Saccharomyces cerevisiae (codon analysis, gradient peak analysis, genome mapping, transcriptome mapping)
  • Drosophila melanogaster (quantitative phenotyping, differential expression analysis)
  • Neisseria meningitidis (genome mapping, differential expression analysis)

Infrastructure:

Main processing workstation: 12-thread Intel "desktop" with 64GB memory and 3TB hard drive space (expandable as necessary). I encourage clients to purchase their own bioinformatics servers / workstations, and will use remote systems for analysis when available.

Other services offered by Gringene Bioinformatics:

Service Description Price
Differential Gene Expression Analysis Inquire
Transcriptome Mapping Inquire
Genome Mapping Inquire
Custom scripting and special projects Inquire
Transcriptome de novo Assembly Inquire
Other Services Inquire
Whole Genome de novo Assembly Inquire

Next Generation Intelligence

NGS provider Italy

NGI is a platform for Next Generation Sequencing data analysis. We offer a wide range of bioinformatics tools and an experienced and professional collaboration service for any type of biological data analysis. We provide both standard and customized analysis, custom softwares and pipelines development and post-sequencing support. We'll enhance and make easier your discovery process.

Expertise:

Our expertise is in the epigenetics field in mouse and human organisms.

Infrastructure:

we will provide FTP access to our storage server to upload raw data and download analyzed data.

Other services offered by Next Generation Intelligence:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Base Calling Inquire
Targeted Capture Analysis Inquire
Differential Gene Expression Analysis Inquire
Genome Mapping Inquire
Small RNA Mapping Inquire
Exome Analysis Inquire
Transcriptome Mapping Inquire
Genome Annotation Inquire
Transcriptome Annotation Inquire
Custom scripting and special projects Inquire
Transcriptome de novo Assembly Inquire
Other Services Inquire
SNP / Indel Mapping Inquire
Small RNA Annotation Inquire
SNP/SV/CNV Discovery Inquire
Methylation Analysis Inquire
ChIP-Seq Analysis Inquire
Variant Annotation Inquire

ecSeq Bioinformatics

Germany

Bioinformatics solutions

ecSeq provides a variety of bioinformatics service packages suited for most everyday high-throughput sequencing experiments. We are particularly engaged in RNA-seq projects (trancriptomics, differential expression), ncRNA analysis (small RNA-seq, ncRNA annotation) and epigenome sequencing (bilsufilte and methylation analyses). Further bioinformatics solutions include SNP calling, variant annotation & prioritisation as well as development of customized algorithms.

Public workshops and eTrainings

We develop eTrainings and provide workshops for employee training in bioinformatics. Several times a year, we organize well-attended workshops on selected topics in next-generation sequencing data analysis. Test datasets are used for getting started in applying and developing bioinformatic tools.

Topics covered by our workshops include:

  • RNA-seq bioinformatics
  • Sequencing technolgies
  • Small RNA-seq data analysis
  • Genomic data visualization
  • Perl for bioinformatics
  • Programming in R

Expertise:

We have long experience in the development and application of bioinformatics methods to high-throughput sequencing experiments. These methods have been successfully applied in various experimental designs ranging from ncRNA and mRNA sequencing to genome/epigeome analyses. We have worked with sequencing data from humans, lifestock species (chicken, cow, turkey), plants and bacteria. Our employees are continuously involved in projects from national and international consortia, like the International Cancer Genome Consortium (ICGC) or the Leipzig Research Centre for Civilization Diseases (LIFE).

Infrastructure:

We have access to moderate computation resources allowing us to process ~120GB sequence data per week.

Other services offered by ecSeq Bioinformatics:

Service Description Price
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
ChIP-Seq Analysis Inquire
Genome Mapping Inquire
Variant Annotation Inquire
Small RNA Mapping Inquire
Transcriptome Mapping Inquire
Small RNA Annotation Inquire
Methylation Analysis Inquire
Custom scripting and special projects Inquire
SNP / Indel Mapping Inquire
Transcriptome Annotation Inquire
Differential Gene Expression Analysis Inquire
Exome Analysis Inquire
SNP/SV/CNV Discovery Inquire

Station X

United States of America

We offer a powerful genomics software platform that makes various bioinformatics tasks fairly straightforward to perform and deliver to customers. We also wrap this product with various service offerings for folks interested in one-off projects that deliver results rather than just subscribing to a software solution and then do the work themselves. We are comfortable with both scenarios. We are well versed in working with RNA-Seq, Genomes, Exomes, targeted panels, miRNA-Seq, Copy Number, Gene Expression, Protein Expression, and DNA Methylation from the level of raw sequencing reads or chip data all the way through to statistically-driven and knowledge-driven interpretations.

Expertise:

We are experienced in developing bioinformatics pipelines, providing data management solutions, analyzing the data using statistical methods and knowledge driven methods, and delivering professional-grade results. We are most familiar with human genomics projects, but have experience with other organisms as well. We are most focused on supporting sequencing projects, but are very capable of supporting array and PCR-based projects as well.

Infrastructure:

We leverage Amazon Web Services for most of our storage (EBS & S3) and computational resources (EC2). We are not frivolous about security, and we can provide you with security documentation to demonstrate how we leverage cloud resources while keeping best-in-class security. We also have powerful 16-core machines in our own private cloud that we leverage for service projects as well.

Years in service: 9

Other services offered by Station X:

Service Description Price
Exome Analysis $2500.00 USD (flat price)
Differential Gene Expression Analysis $1655.00 USD (flat price)
Small RNA Annotation $85.00 USD (per sample)
Small RNA Mapping $100.00 USD (per sample)
SNP / Indel Calling $100.00 USD (per sample)
SNP / Indel Mapping $100.00 USD (per sample)
Transcriptome Annotation $85.00 USD (per sample)
Variant Annotation $85.00 USD (per sample)
Custom scripting and special projects $275.00 USD (per hour)
Comparative Genome Analysis $2500.00 USD (flat price)
SNP/SV/CNV Discovery $100.00 USD (per sample)
Read Filtering and Cleaning $115.00 USD (per sample)
Other Services Visualizations, Report Generation, Customizations to our platform, Training, Scientific support, Presentation support, etc. $300.00 USD (per hour)
Genome Annotation $85.00 USD (per sample)
Transcriptome Mapping $100.00 USD (per sample)

NXT-Dx

NGS provider Belgium

At NXT-Dx we can offer SE50, PE50 and PE100 sequencing on the Illumina HiSeq. On top of this we can also offer different sequencing settings on the Illumina MiSeq and shortly we will also be able to offer sequencing on the Illumina NextSeq.

We can offer sequencing of already prepared libraries but we can also offer full-scope projects whereby we receive cells, tissue, gDNA or RNA and take care of the sample preparation, library prep, sequencing and bio-informatics analysis.

We have worked with samples from all kind of species (mammalian, plant, bacterial) and all kind of cell types.

We pride ourselves in having close contact with our customers and only one single contact point. Also after the delivery of the data, we remain available to answer any questions customers might have on their data, their analysis, etc.

Years in service: 8

Other services offered by NXT-Dx:

Service Description Price
Differential Gene Expression Analysis $170.00 USD (per hour)
Transcriptome Mapping $170.00 USD (per hour)
Comparative Genome Analysis $170.00 USD (per hour)
Custom scripting and special projects $170.00 USD (per hour)
Read Filtering and Cleaning $170.00 USD (per hour)
Exome Analysis $170.00 USD (per hour)
ChIP-Seq Analysis $170.00 USD (per hour)
Small RNA Mapping $170.00 USD (per hour)
Genome Mapping $170.00 USD (per hour)
Targeted Capture Analysis $170.00 USD (per hour)
Genome Annotation $170.00 USD (per hour)
Small RNA Annotation $170.00 USD (per hour)
Methylation Analysis $170.00 USD (per hour)
Transcriptome Annotation $170.00 USD (per hour)
Variant Annotation $170.00 USD (per hour)
Base Calling $170.00 USD (per hour)

SciBerg

Germany

We offer computational analyses of Next-Generation Sequencing data (Illumina and Ion Torrent platforms), including RNA-seq, small RNA-seq, DNA-seq, Bisulfite-seq and ChIP-seq. Our bioinformatics support can be fully customized for your research needs, the scope and objectives of the study. We apply only up-to-data well-proven software and pipelines working under Unix/Linux environment. Optionally, our experts can help to interpret the obtained results from the scientific point of view, provided some of them are working in a close research field.

Other services offered by SciBerg:

Service Description Price
Differential Gene Expression Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Mapping Inquire
Custom scripting and special projects Inquire
Other Services Inquire
Exome Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
ChIP-Seq Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Small RNA Mapping Inquire
SNP / Indel Mapping Inquire
Genome Mapping Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
SNP/SV/CNV Discovery Inquire
Genome Annotation Inquire
Small RNA Annotation Inquire
Methylation Analysis € 1.32 per 1 million reads + € 13.20 commission per each sample Inquire
Transcriptome Annotation Inquire
Variant Annotation Inquire

HybridStat Predictive Analytics

Greece

HybridStat is a company bringing together a team of highly qualified and motivated scientists and developers, whose expertise spans a variety of statistics and computer science domains. Main HybridStat’s services are centered on bioinformatics, biostatistics and analytics of high-throughput data derived from modern biological technologies such as Next Generation Sequencing (NGS), DNA microarrays and Mass Spectrometry. In addition, HybridStat offers customized software solutions regarding the above.

Regarding NGS, HybridStat offers a variety of one-stop shop data analysis and analytics services, spanning from genome alignments and preprocessing of raw short read fragments, up to analytical and specialized reports and figures describing the results of various NGS protocols including RNA-Seq (quality control, differential expression and splicing analysis, biochemical pathway enrichments etc.), ChIP-Seq (data normalization and peak calling, gene-binding site associations, methylation profiles, motif finding etc.), Whole Exome and Whole Genome Sequencing (data preprocessing, variant calling, filtering, annotation and interpretation, etc.) and Single Cell Sequencing data analysis, using both open source and optimized proprietary pipelines.

HybridStat, can also offer complete support to your organization through its advanced Whole Exome Sequencing analytics platform Clingon (www.clingon-mds.com). Clingon is a complete, integrated one-stop clinical genomics and medical decision support platform which performs data analysis from raw data up to the generation of clinical reports. It uniquely integrates and curates a handful of resources regarding gene-disease and gene product-drug associations as well as curated variant annotation data towards more timely and accurate results and the optimal design of personalized treatment plans.

Years in service: 5

Other services offered by HybridStat Predictive Analytics:

Service Description Price
Differential Gene Expression Analysis A fully descriptive and interactive report is provided. $300.00 USD (flat price)
Comparative Genome Analysis $60.00 USD (per hour)
Custom scripting and special projects $70.00 USD (per hour)
Other Services $70.00 USD (per hour)
Read Filtering and Cleaning $20.00 USD (per sample)
Read Filtering and Cleaning $25.00 USD (per sample)
Read Filtering and Cleaning $30.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $200.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $150.00 USD (per sample)
Exome Analysis Exome analysis includes quality control, alignment to the reference genome, alignment statistics, variant calling, variant annotation with our proprietary annotation pipeline which guarantees better results especially in indels and gene-disease association reports. $170.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $85.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $70.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq analysis includes alignment to the reference genome, quality control, enriched region (peak) calling and association of enriched regions with nearby genes. $100.00 USD (per sample)
SNP / Indel Mapping $40.00 USD (per sample)
SNP / Indel Mapping $25.00 USD (per sample)
SNP / Indel Mapping $30.00 USD (per sample)
Genome Mapping $25.00 USD (per sample)
Genome Mapping $20.00 USD (per sample)
Genome Mapping $30.00 USD (per sample)
SNP / Indel Calling $50.00 USD (per sample)
SNP / Indel Calling $45.00 USD (per sample)
SNP / Indel Calling $40.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $60.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $50.00 USD (per sample)
Variant Annotation Variant annotation is performed with our proprietary annotation pipeline which guarantees better results especially in indels. $40.00 USD (per sample)
Whole Genome de novo Assembly $1000.00 USD (flat price)

Omega Bioservices

NGS provider United States of America

Our facility is unique because we offer the full range of NGS service from sample extraction through to data analysis. Sample extraction capabilities and expertise cover the entire spectrum of both environmental and clinical sample types.

Years in service: 7

Other services offered by Omega Bioservices:

Service Description Price
Differential Gene Expression Analysis Identify differentially expressed genes among samples using RNA-seq technique. Human, mouse, rat, fruit fly, cattle, pig, chicken, zebrafish, C. elegans, maize, thale cress, Japonica rice (Oryza sativa) and yeast, up to 7.5gb/sample. $56.00 USD (per sample)
Differential Gene Expression Analysis Custom bioinformatics for non-model organisms, or other unusual cases. Does not include setup fee. $110.00 USD (per sample)
Transcriptome Mapping Map mRNAs to either the reference or the assembled genome. $332.00 USD (per sample)
Custom scripting and special projects We are open to your custom analysis projects. Set up a call with our Project Scientist team today to discuss your needs and obtain a quote. $500.00 USD (per sample)
Read Filtering and Cleaning Examination of sequencing quality and removal of low quality reads prior to downstream analysis provided free of charge with sequencing service if desired. $110.00 USD (per sample)
Exome Analysis Whole exome sequencing involves capturing the coding region of the genome, or exons (EXpressed regiONS). SNVs and indels are the most important and abundant types of variation in exons. Human exome analysis provided free of charge with sequencing service. $332.00 USD (per sample)
ChIP-Seq Analysis ChIP-Seq is a technique to identify DNA loci bound by a specific protein. The standard output of ChIP-seq analysis includes peak call and motif enrichment at binidng sites. $332.00 USD (per sample)
Small RNA Mapping Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $221.00 USD (per sample)
SNP / Indel Mapping Mapped to the reference genome and annotated using public database. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Mapping Genome mapping is a technique used to assign the location of a particular gene on a chromosome and measure their relative locations and distances between genes. Mapping to many model organisms provided free of charge with sequencing service. $110.00 USD (per sample)
Metagenomic Analysis Metagenomic analysis involves the identification and quantification of genetic material from environmental, uncultured microorganisms. Analysis involving only 16S rRNA amplicon sequences are provided free of charge with sequencing service. $551.00 USD (per sample)
SNP / Indel Calling Identify SNPs and Indels in the region of interested, using DNA sequencing. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
SNP/SV/CNV Discovery Variants discovery. Analysis for human, mouse, and rat provided free of charge with sequencing service. $332.00 USD (per sample)
Targeted Capture Analysis Variant call, gene annotation. Provided free of charge with sequencing service. $332.00 USD (per sample)
Genome Annotation Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the sequence and identifying which regions can be called genes. $221.00 USD (per sample)
Small RNA Annotation Small RNA (miRNA, lincRNA, snoRNA, snRNA, tRNA) libraries will be mapped to the reference genome and annotated using public databases e.g. miRBase. $332.00 USD (per sample)
Methylation Analysis The processing of bisulfite sequencing data includes sequence alignment and the quantification of absolute DNA methylation at base resolution. Methylation analysis for data generated from the Illumina TruSeq kit are provided free of charge with sequencing service. $553.00 USD (per sample)
Transcriptome de novo Assembly Identify and quantify putative mRNA transcripts using RNA-seq data for unannotated species. $553.00 USD (per sample)
Transcriptome Annotation Annotate or predict functions of transcribed genes using well know gene ontology tools. $332.00 USD (per sample)
Variant Annotation Identified variants will be mapped to the reference genome and annotated using public database. Analysis for human sequences provided free of charge with sequencing service. $332.00 USD (per sample)
Whole Genome de novo Assembly Prices vary according to genome type. Please contact our Science Project Team. Some small genome assembly provided free of charge with sequencing service. $3315.00 USD (per sample)
Base Calling Demultiplex data and convert BCL files to FASTQ files $110.00 USD (per sample)

Bioinformatics Unit, Panacea Biosciences

NGS provider India

Other services offered by Bioinformatics Unit, Panacea Biosciences:

Service Description Price
Custom scripting and special projects Based on project requirements. $15.00 USD (per hour)
Read Filtering and Cleaning $40.00 USD (per sample)
Exome Analysis End to End Exome-Seq Data Analysis $75.00 USD (per sample)
ChIP-Seq Analysis we present step-by-step guidelines for the computational analysis of ChIP-seq data. We address all the major steps in the analysis of ChIP-seq data: sequencing depth selection, quality checking, mapping, data normalization, assessment of reproducibility, peak calling, differential binding analysis, controlling the false discovery rate, peak annotation, visualization, and motif analysis. $80.00 USD (per sample)
Genome Mapping Available only for Human, Mouse and available sequenced geneomes $75.00 USD (per sample)
SNP/SV/CNV Discovery End to End variant analysis $70.00 USD (per sample)
Small RNA Annotation Available only for Human, Mouse and available sequenced geneomes $60.00 USD (per sample)
Base Calling Base calling is the process of assigning bases (nucleobases) to chromatogram peaks. One computer program for accomplishing this job is Phred base-calling, which is a widely used basecalling software program by both academic and commercial DNA sequencing laboratories because of its high base calling accuracy. $50.00 USD (per sample)

Leucine Rich Bio

India

Other services offered by Leucine Rich Bio:

Service Description Price
Read Filtering and Cleaning Leucine Rich Bio offers Read filtering, cleaning and quality control analysis. We also offer statistical and heuristic analysis. Literature mining services are also provided. As we are Bangalore (India) based company, we offer very competitive pricing. $75.00 USD (per sample)
Transcriptome Annotation Inquire
Small RNA Annotation Inquire
Transcriptome Mapping Inquire
Comparative Genome Analysis Inquire
Variant Annotation Inquire
Differential Gene Expression Analysis Inquire
Targeted Capture Analysis Inquire
SNP / Indel Calling Inquire
SNP / Indel Mapping Inquire
Transcriptome de novo Assembly Inquire
Exome Analysis Inquire
Whole Genome de novo Assembly Inquire
SNP/SV/CNV Discovery Inquire
Custom scripting and special projects Inquire
Genome Annotation Inquire
Genome Mapping Inquire
ChIP-Seq Analysis Inquire
Metagenomic Analysis Inquire
Microbiome Analysis Inquire

DREAMgenics

NGS provider Spain

We offer bioinformatics analysis services for human and other organisms genomic and transcriptomic NGS data.

  • Our team of experts offers a completely personalized consulting service, including scientific and technical solutions to your needs. We help you to obtain the best results from your analysis.

  • Our collaboration with the most reliable sequencing providers allow us to select the most suitable platform for your project. We also can assist you in all steps prior to sequencing, such us sample and library preparation and quality controls.

  • DREAMgenics bioinformatics framework has been designed to readily adapt to your needs. Capable of integrating your own algorithms, pipelines and databases to complement the data analysis and interpretation.

  • Our analyses identify high quality genomic variants through excellent sensitivity and specificity standards, extracting meaningful biological information and reducing validation process costs. The results will be delivered through a detailed report.

  • We offer the possibility of advanced visualization and interactive review of results through our exclusive DG Reports web application. (Filtering and priorization of variants, Pre-classification of variants, Graphic interface (genomic browser), Statistics and quality controls, Exportable information, Automated generation of reports).

All our procedures meet with the requirements set by the new General Data Protection Regulation.

Years in service: 8

Other services offered by DREAMgenics:

Service Description Price
ChIP-Seq Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Exome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Base Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Comparative Genome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Custom scripting and special projects https://www.dreamgenics.com/en/bioinformatics-services/ https://www.dreamgenics.com/en/research-projects/ Inquire
Other Services - Research projects https://www.dreamgenics.com/en/research-projects/ - Bioinformatics software design and developments https://www.dreamgenics.com/en/hd-genome-one-en/ - Gene and/or regions of interest panels, ATAC Seq, Family studies, trio analysis.. https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Differential Gene Expression Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Genome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Metagenomic Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Methylation Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Microbiome Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Read Filtering and Cleaning https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Small RNA Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Calling https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP / Indel Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
SNP/SV/CNV Discovery https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Targeted Capture Analysis https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Transcriptome Mapping https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Variant Annotation https://www.dreamgenics.com/en/bioinformatics-services/ Inquire
Whole Genome de novo Assembly https://www.dreamgenics.com/en/bioinformatics-services/ Inquire

Diploid

Belgium

At Diploid, we turn NGS data into clinical reports or research reports, allowing hospitals, commercial labs and research institutes to outsource human genome interpretation.

Our focus is on 3 major areas: - Rare disease diagnostics - Carrier screening - Cancer

With high-quality diagnostics, fast turn-around times, secure infrastructure, and a personal approach, Diploid is rapidly becoming a trusted partner for genetic departments and commercial labs worldwide.

Over the past few months, we have been working for the following institutes and labs: - Oxford University Hospitals (UK) - University of Verona (Italy) - Otogenetics (US) - Macrogen (US) - King Faisal Specialist Hospital (KSA) - National Reference Lab (UAE)

Years in service: 5

Other services offered by Diploid:

Service Description Price
Custom scripting and special projects Contact us for custom bioinformatics development Inquire
Exome Analysis - Starting from BAM or VCF - Data can be delivered by secure online upload or by HDD shipment - Extensive clinical or research report, signed by a certified clinical geneticist - 14 business days turn around time - Optional Fast-track service (7 days TAT) - First 3 analyses are FREE - See http://www.diploid.com/service for more info Inquire

genexa Ltd

Switzerland

genexa is a genomic data analysis provider located in Switzerland. Our bioinformatics services are centered around de novo assembly of genomes and metagenomes. We focus on processing, analysis, and interpretation of your genomics data. For all our fields of expertise, we offer to perform the entire analysis workflow from raw data to documentation, but also consulting and troubleshooting if required. genexa also provides resources to run computationally demanding tasks for specific jobs if you have an existing analysis workflow, but lack the computational resources to run it on large amounts of data. For further information check: genexa.ch

Years in service: 5

Other services offered by genexa Ltd:

Service Description Price
Comparative Genome Analysis Inquire
Microbiome Analysis Inquire
Variant Annotation Inquire
Genome Annotation Inquire
Metagenomic Analysis Inquire
SNP / Indel Calling Inquire
Read Filtering and Cleaning Inquire
Custom scripting and special projects Inquire
Whole Genome de novo Assembly Inquire
Other Services We offer bioinformatics services using long-read sequencing (PacBio & Oxford Nanopore Technologies). We have several years of experience using third-gen. technologies, mainly applying these technologies for de novo assembly of individual genomes and metagenomes. We also offer transcriptomic analyses using long-read technologies. If you want to start using PacBio or Oxford Nanopore Technologies,… Inquire
Transcriptome Annotation Inquire
Base Calling Inquire
Differential Gene Expression Analysis Inquire

Cofactor Genomics

NGS provider United States of America

Cofactor is focused on 3 main applications: RNA-sequencing, de novo assembly, and SNP/INDEL detection via resequencing. Over the last year, we have put significant R&D into our RNA-seq pipeline, and are now pleased to offer industry-leading protocols such as molecular spike-in controls, unprecedented QA/QC checks, ribosomal content screening, saturation analysis, and our ActiveSite Expression Viewer. These same protocols are also applied to our miRNA sequencing pipeline.

Other applications that fit well within our pipeline are: amplicon sequencing, custom capture and sequencing, 16S sequencing/microbiome sequencing, and highly custom projects.

Our scientists are happy to work with traditional model organisms, but we are experts in the more obscure. We've worked with nucleic acids from the complex field isolates, many plants including grapes, a variety of obscure animals including the Tardigrade (Water bear), and bacteria from multiple sources (micro biome, marine, biofuels, etc) to name a few.

While we are set-up to act as consultants, and support researchers throughout a full-service sequencing project, we are also happy to address the needs of more experienced researchers. Our expertise in library preparation or analysis may also be procured separate from the full-service offerings. And, those researchers who work with us in any capacity will have access to our team of scientists for support.

We have worked on small scale (1 sample) projects, all the way up through the larger, high throughput projects developed by big pharma. Every customer receives the same level of attentive, knowledgable customer service.

Years in service: 11

Other services offered by Cofactor Genomics:

Service Description Price